Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX566786: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318747' containing sample 'VET0232R'
4 ILLUMINA (Illumina HiSeq 2000) runs: 12.5M spots, 2.5G bases, 1.2Gb downloads

UUID: acc279a6-dc3b-4eb8-aeba-6aef70c1d667

Design: Illumina sequencing of Staphylococcus aureus VET0232R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228614 • SRP042732 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0232R

SAMN02404106 • SRS626661 • All experiments • All runs

Organism: Staphylococcus aureus VET0232R

Library:

Name: Pond-318747

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471508.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLFG

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55337

research_project: RP-513

root_sample_id: SM-4Q5OG

sample_id: SM-5CLFG

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 12.5M spots, 2.5G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR1328176	3,127,481	631.8M	311Mb	2014-06-03
SRR1328187	3,130,213	632.3M	309.3Mb	2014-06-03
SRR1342326	3,157,283	637.8M	310.6Mb	2014-06-05
SRR1346335	3,104,353	627.1M	305.9Mb	2014-06-06

ID:: 809603

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