Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX508054: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318389' containing sample 'VET0406R'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.6M spots, 933.7M bases, 439.2Mb downloads

UUID: 051b4738-bdc7-4f26-9929-b41bef1f4ea9

Design: Illumina sequencing of Staphylococcus aureus VET0406R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA226567 • SRP040795 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0406R

SAMN02404218 • SRS586927 • All experiments • All runs

Organism: Staphylococcus aureus VET0406R

Library:

Name: Pond-318389

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 470118.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5C8U4

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55158

research_project: RP-513

root_sample_id: SM-4PMVJ

sample_id: SM-5C8U4

work_request: 39366

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-01-29 22:04:23.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 4.6M spots, 933.7M bases, 439.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1213852	2,305,332	465.7M	219.2Mb	2014-04-03
SRR1293413	2,316,790	468M	219.9Mb	2014-05-21

ID:: 707358

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity