Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX548509: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318402' containing sample 'VET0421R'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.6M spots, 938.7M bases, 442.9Mb downloads

UUID: ac4307df-4571-4aea-b3f8-509edff54b19

Design: Illumina sequencing of Staphylococcus aureus VET0421R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228738 • SRP045025 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0421R

SAMN02404228 • SRS616375 • All experiments • All runs

Organism: Staphylococcus aureus VET0421R

Library:

Name: Pond-318402

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 470131.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5C8UT

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55167

research_project: RP-513

root_sample_id: SM-4PMVT

sample_id: SM-5C8UT

work_request: 39366

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-01-29 22:04:23.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 4.6M spots, 938.7M bases, 442.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR1293577	2,327,202	470.1M	221.6Mb	2014-05-21
SRR1531016	2,320,065	468.7M	221.3Mb	2014-07-28

ID:: 785467

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