Mapped reads for uncultivated Giovannonibacteria bacterium UBA11713 g... - SRA

SRX3577215: Mapped reads for uncultivated Giovannonibacteria bacterium UBA11713 genome recovered from SRX1161912
1 ILLUMINA (Illumina HiSeq 2000) run: 35,986 spots, 10.2M bases, 4.1Mb downloads

Design: Reads from SRX1161912 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA11713 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

show Abstracthide Abstract

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Giovannonibacteria bacterium UBA11713 genome recovered from SRX1161912

SAMN08019252 • SRS2846946 • All experiments • All runs

Organism: Candidatus Giovannonibacteria bacterium

Library:

Name: UBA11713_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 35,986 spots, 10.2M bases, 4.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR6487560	35,986	10.2M	4.1Mb	2018-02-23

ID:: 4962717

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Sequence Read Archive

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