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Long read sequencing of carbapenemase producing organisms
1 OXFORD_NANOPORE (MinION) run: 66,700 spots, 297.5M bases, 245.7Mb downloads
Whole genome sequencing of CRBC isolates
1 ILLUMINA (Illumina NovaSeq 6000) run: 5.8M spots, 1.8G bases, 717.9Mb downloads
1 ILLUMINA (Illumina NovaSeq 6000) run: 4.5M spots, 1.4G bases, 389.5Mb downloads
WGS of gram negative isolates
1 ILLUMINA (Illumina MiSeq) run: 336,143 spots, 156.7M bases, 100.3Mb downloads
Bacterial isolates recovered from wastewater for the GenomeTrakr Diverse Pathogen Project.
1 ILLUMINA (Illumina MiSeq) run: 862,633 spots, 384M bases, 223.3Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 751,401 spots, 333.6M bases, 194.9Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 672,616 spots, 304M bases, 180.6Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 801,494 spots, 356.6M bases, 212.8Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 990,308 spots, 444M bases, 263.6Mb downloads
Illumina sequencing of 2024HL-00417
1 ILLUMINA (NextSeq 500) run: 2M spots, 584.1M bases, 223.1Mb downloads
CDC HAI-Seq Gram-negative bacteria
1 ILLUMINA (Illumina MiSeq) run: 881,473 spots, 429M bases, 256.3Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 784,214 spots, 373.9M bases, 200Mb downloads
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 518.4M bases, 302.8Mb downloads
Enhanced detection system for hospital associated transmission (EDS-HAT)
1 ILLUMINA (NextSeq 550) run: 1.4M spots, 407.7M bases, 166.8Mb downloads
1 ILLUMINA (NextSeq 550) run: 1.8M spots, 534.4M bases, 204.7Mb downloads
5_3_N
1 ILLUMINA (Illumina MiSeq) run: 2.2M spots, 646.3M bases, 343.3Mb downloads
Nanopore of of SAMN30648327
1 OXFORD_NANOPORE (MinION) run: 111,102 spots, 1.5G bases, 1.2Gb downloads
Illumina Novaseq of SAMN30648327
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.4M spots, 613.3M bases, 335.1Mb downloads
Sanger-Seq of microbe:honeybee gut
1 ILLUMINA (Illumina HiSeq 1000) run: 1 spots, 1,156 bases, 57,192b downloads
Illumina MiSeq paired end sequencing of C4611
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 571.4M bases, 262.8Mb downloads
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