6ZJ3: Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

PDB ID: 6ZJ3Download
MMDB ID: 193842
PDB Deposition Date: 2020/6/27
Updated in MMDB: 2024/04
Experimental Method:
electron microscopy
Resolution: 3.15  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZJ3: 98-meric; determined by author
Molecular Components in 6ZJ3
Label Count Molecule
Proteins (78 molecules)
1
Ribosomal Protein ES1
Molecule annotation
1
Ribosomal Protein US2
Molecule annotation
1
Ribosomal Protein US3
Molecule annotation
1
Ribosomal Protein US4
Molecule annotation
1
Ribosomal Protein ES4
Molecule annotation
1
Ribosomal Protein US5
Molecule annotation
1
Ribosomal Protein ES6
Molecule annotation
1
Ribosomal Protein US7
Molecule annotation
1
Ribosomal Protein ES7
Molecule annotation
1
Ribosomal Protein US8
Molecule annotation
1
Ribosomal Protein ES8
Molecule annotation
1
Ribosomal Protein US9
Molecule annotation
1
Ribosomal Protein Us10
Molecule annotation
1
Ribosomal Protein Es10
Molecule annotation
1
Ribosomal Protein Us11
Molecule annotation
1
Ribosomal Protein Us12
Molecule annotation
1
Ribosomal Protein Es12
Molecule annotation
1
Ribosomal Protein Us13
Molecule annotation
1
Ribosomal Protein Us14
Molecule annotation
1
Ribosomal Protein Us15
Molecule annotation
1
Ribosomal Protein Us17
Molecule annotation
1
Ribosomal Protein Es17
Molecule annotation
1
Ribosomal Protein Us19
Molecule annotation
1
Ribosomal Protein Es19
Molecule annotation
1
Ribosomal Protein Es21
Molecule annotation
1
Ribosomal Protein Es24
Molecule annotation
1
Ribosomal Protein Es25
Molecule annotation
1
Ribosomal Protein Es26
Molecule annotation
1
Ribosomal Protein Es27
Molecule annotation
1
Ribosomal Protein Es28
Molecule annotation
1
Ribosomal Protein Es30
Molecule annotation
1
Ribosomal Protein Es31
Molecule annotation
1
Ribosomal Protein Eseug1
Molecule annotation
1
Rack1
Molecule annotation
1
Ribosomal Protein UL2
Molecule annotation
1
Ribosomal Protein UL3
Molecule annotation
1
Ribosomal Protein UL4
Molecule annotation
1
Ribosomal Protein UL5
Molecule annotation
1
Ribosomal Protein UL6
Molecule annotation
1
Ribosomal Protein EL6
Molecule annotation
1
60S Ribosomal Protein L7A
Molecule annotation
1
Ribosomal Protein Ul13
Molecule annotation
1
Ribosomal Protein El13
Molecule annotation
1
Ribosomal Protein Ul14
Molecule annotation
1
Ribosomal Protein El14
Molecule annotation
1
Ribosomal Protein Ul15
Molecule annotation
1
Ribosomal Protein El15
Molecule annotation
1
60S Ribosomal Protein L10
Molecule annotation
1
Ribosomal Protein Ul18
Molecule annotation
1
Ribosomal Protein El18
Molecule annotation
1
Ribosomal Protein El19
Molecule annotation
1
Ribosomal Protein El20
Molecule annotation
1
Ribosomal Protein El21
Molecule annotation
1
Ribosomal Protein Ul22
Molecule annotation
1
Ribosomal Protein El22
Molecule annotation
1
Ribosomal Protein Ul23
Molecule annotation
1
Ribosomal Protein Ul24
Molecule annotation
1
Ribosomal Protein El24
Molecule annotation
1
Ribosomal Protein El27
Molecule annotation
1
Ribosomal Protein Elegr1
Molecule annotation
1
Ribosomal Protein Ul29
Molecule annotation
1
Ribosomal Protein El29
Molecule annotation
1
Ribosomal Protein Ul30
Molecule annotation
1
Ribosomal Protein El30
Molecule annotation
1
Ribosomal Protein El31
Molecule annotation
1
Ribosomal Protein El32
Molecule annotation
1
Ribosomal Protein El33
Molecule annotation
1
Ribosomal Protein El34
Molecule annotation
1
Ribosomal Protein El36
Molecule annotation
1
Ribosomal Protein El37
Molecule annotation
1
Ribosomal Protein El38
Molecule annotation
1
Ribosomal Protein El39
Molecule annotation
1
Ribosomal Protein El40
Molecule annotation
1
Ribosomal Protein El41
Molecule annotation
1
Ribosomal Protein El42
Molecule annotation
1
Ribosomal Protein El43
Molecule annotation
1
Ribosomal Protein Elegr2
Molecule annotation
1
Ribosomal Protein Elegr3
Molecule annotation
Nucleotides(20 molecules)
1
18S rRNA
Molecule annotation
1
A-trna
Molecule annotation
1
P-trna
Molecule annotation
1
E-trna
Molecule annotation
1
A-site tRNA
Molecule annotation
1
5.8s rRNA
Molecule annotation
1
LSU rRNA Chain 1
Molecule annotation
1
LSU rRNA Chain 2
Molecule annotation
1
LSU rRNA Chain 3
Molecule annotation
1
LSU rRNA Chain 4
Molecule annotation
1
LSU rRNA Chain 5
Molecule annotation
1
LSU rRNA Chain 6
Molecule annotation
1
LSU rRNA Chain 7
Molecule annotation
1
LSU rRNA Chain 8
Molecule annotation
1
LSU rRNA Chain 9
Molecule annotation
1
LSU rRNA Chain 10
Molecule annotation
1
LSU rRNA Chain 11
Molecule annotation
1
LSU rRNA Chain 12
Molecule annotation
1
LSU rRNA Chain 13
Molecule annotation
1
5S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
5
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303