6OZP: Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 180 min soak in 10 mM Mn2+

PDB ID: 6OZPDownload
MMDB ID: 179119
PDB Deposition Date: 2019/5/15
Updated in MMDB: 2019/10
Experimental Method:
x-ray diffraction
Resolution: 1.96  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6OZP: hexameric; determined by author and by software (PISA)
Molecular Components in 6OZP
Label Count Molecule
Proteins (2 molecules)
2
Endonuclease V
Molecule annotation
Nucleotides(4 molecules)
2
Dna/rna (5'-r(*cp*gp*gp*up*ap*ap*cp*cp*c)-d(p*i)-r(p*a)-3')
Molecule annotation
2
RNA (5'-r(p*up*ap*up*gp*cp*ap*up*gp*cp*ap*up*u)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
11
MANGANESE (II) IONMANGANESE (II) ION
2
2
GLYCEROLGLYCEROL
3
2
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
4
6
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
3
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303