6T8H: Cryo-EM structure of the DNA-bound PolD-PCNA processive complex from P. abyssi

PDB ID: 6T8HDownload
MMDB ID: 184920
PDB Deposition Date: 2019/10/24
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 3.77  Å
Source Organism:
Pyrococcus abyssi GE5▼
Similar Structures:
Biological Unit for 6T8H: heptameric; determined by author and by software (PISA)
Molecular Components in 6T8H
Label Count Molecule
Proteins (5 molecules)
3
DNA Polymerase Sliding Clamp
Molecule annotation
1
DNA Polymerase II Small Subunit
Molecule annotation
1
DP2 Subunit of D-family DNA-polymerase
Molecule annotation
Nucleotides(2 molecules)
1
DNA Primer
Molecule annotation
1
DNA Template
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
FE (III) ION (Link to PubChem not yet available)FE (III) ION
2
4
ZINC ION (Link to PubChem not yet available)ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303