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8UU8: Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

PDB ID:

8UU8 Download

MMDB ID:

243374

PDB Deposition Date:

2023/10/31

Updated in MMDB:

2024/05

Experimental Method:

electron microscopy

Resolution:

3.1 Å

Source Organism:

Escherichia phage T4▼

Taxonomy	Molecule
Escherichia phage T4	w
Listeria monocytogenes EGD-e	v
Listeria innocua	a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, A, B, C, D, E, F, G, I, H, L, M, N, O, P , Q, R, S, T, U, V, W, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8
Escherichia coli	x

Similar Structures:

Biological Unit for 8UU8: 54-meric; determined by author and by software

Molecular Components in 8UU8
Label	Count	Molecule
Proteins (49 molecules)
b	1	Small Ribosomal Subunit Protein US2
c	1	Small Ribosomal Subunit Protein US3
d	1	Small Ribosomal Subunit Protein US4
e	1	Small Ribosomal Subunit Protein US5
f	1	Small Ribosomal Subunit Protein BS6
g	1	Small Ribosomal Subunit Protein US7
h	1	Small Ribosomal Subunit Protein US8
i	1	Small Ribosomal Subunit Protein US9
j	1	Small Ribosomal Subunit Protein Us10
k	1	Small Ribosomal Subunit Protein Us11
l	1	Small Ribosomal Subunit Protein Us12
m	1	Small Ribosomal Subunit Protein Us13
n	1	Small Ribosomal Subunit Protein Us14
o	1	Small Ribosomal Subunit Protein Us15
p	1	Small Ribosomal Subunit Protein Bs16
q	1	Small Ribosomal Subunit Protein Us17
r	1	Small Ribosomal Subunit Protein Bs18
s	1	Small Ribosomal Subunit Protein Us19
t	1	Small Ribosomal Subunit Protein Bs20
v	1	Gtpase Hflx
C	1	Large Ribosomal Subunit Protein UL2
D	1	Large Ribosomal Subunit Protein UL3
E	1	Large Ribosomal Subunit Protein UL4
F	1	Large Ribosomal Subunit Protein UL5
G	1	Large Ribosomal Subunit Protein UL6
I	1	Large Ribosomal Subunit Protein Ul10
H	1	Large Ribosomal Subunit Protein Ul11
L	1	Large Ribosomal Subunit Protein Ul13
M	1	Large Ribosomal Subunit Protein Ul14
N	1	Large Ribosomal Subunit Protein Ul15
O	1	Large Ribosomal Subunit Protein Ul16
P	1	Large Ribosomal Subunit Protein Bl17
Q	1	Large Ribosomal Subunit Protein Ul18
R	1	Large Ribosomal Subunit Protein Bl19
S	1	Large Ribosomal Subunit Protein Bl20
T	1	Large Ribosomal Subunit Protein Bl21
U	1	Large Ribosomal Subunit Protein Ul22
V	1	Large Ribosomal Subunit Protein Ul23
W	1	Large Ribosomal Subunit Protein Ul24
Y	1	Large Ribosomal Subunit Protein Bl27
Z	1	Large Ribosomal Subunit Protein Bl28
1	1	Large Ribosomal Subunit Protein Ul29
2	1	Large Ribosomal Subunit Protein Ul30
3	1	Large Ribosomal Subunit Protein Bl31b
4	1	Large Ribosomal Subunit Protein Bl32
5	1	Large Ribosomal Subunit Protein Bl33
6	1	Large Ribosomal Subunit Protein Bl34
7	1	Large Ribosomal Subunit Protein Bl35
8	1	Large Ribosomal Subunit Protein Bl36
Nucleotides(5 molecules)
a	1	16S Ribosomal RNA
x	1	Pe/e Hybrid State Phenylalanine tRNA
w	1	F-stop mRNA
A	1	23S Ribosomal RNA
B	1	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (428 molecules)
1	423	MAGNESIUM ION
2	4	ZINC ION
3	1	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303