6OZF: Crystal structure of Thermotoga maritima (Tm) Endonuclease V (D110N) in complex with a 12mer DNA containing an inosine followed by a ribo-adenosine

PDB ID: 6OZFDownload
MMDB ID: 179109
PDB Deposition Date: 2019/5/15
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.8  Å
Source Organism:
Similar Structures:
Biological Unit for 6OZF: trimeric; determined by software (PISA)
Molecular Components in 6OZF
Label Count Molecule
Protein (1 molecule)
1
Endonuclease V
(Gene symbol: TM1865)
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
CD
2
DNA/RNA (5'-D(P*AP*AP*TP*GP*I)-R(P*A)-D(P*GP*AP*TP*GP*CP*T)-3')
1
4
CALCIUM IONCALCIUM ION
2
2
SODIUM IONSODIUM ION
3
2
GLYCEROLGLYCEROL
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303