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Zfp119bl zinc finger protein 119b like [ Rattus norvegicus (Norway rat) ]

Gene ID: 102555289, updated on 4-Jan-2025

Summary

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Official Symbol
Zfp119blprovided by RGD
Official Full Name
zinc finger protein 119b likeprovided by RGD
Primary source
RGD:7694240
See related
EnsemblRapid:ENSRNOG00000069449 AllianceGenome:RGD:7694240
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 47.9), Spleen (RPKM 41.6) and 9 other tissues See more
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Genomic context

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See Zfp119bl in Genome Data Viewer
Location:
9q11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (833319..863123, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (746126..775933, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (11123877..11151368)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene ribosomal protein S8, pseudogene 14 Neighboring gene UDP-glucuronate decarboxylase 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene ribosomal protein S21, pseudogene 2 Neighboring gene uncharacterized LOC134480467 Neighboring gene Epstein-Barr virus induced 3 Neighboring gene YJU2 splicing factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 239-like; zinc finger protein 431-like; zinc finger protein 501-like
Names
zinc finger protein 709-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    833319..863123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084324.2 → XP_038940252.1  zinc finger protein 501-like isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZU10
    Related
    ENSRNOP00000077024.1, ENSRNOT00000114772.2
    Conserved Domains (2) summary
    COG5048
    Location:121 → 486
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_006244394.5 → XP_006244456.1  zinc finger protein 431-like isoform X2

    See identical proteins and their annotated locations for XP_006244456.1

    UniProtKB/TrEMBL
    A0A8I5Y998
    Conserved Domains (5) summary
    smart00349
    Location:4 → 46
    KRAB; krueppel associated box
    COG5048
    Location:153 → 518
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:374 → 394
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 43
    KRAB; KRAB box
    pfam13465
    Location:414 → 439
    zf-H2C2_2; Zinc-finger double domain

  3. XM_039084325.2 → XP_038940253.1  zinc finger protein 239-like isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:85 → 238
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:145 → 165
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd20908
    Location:61 → 105
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_039084322.2 → XP_038940250.1  zinc finger protein 431-like isoform X1

    Related
    ENSRNOP00000108116.1, ENSRNOT00000122275.1
    Conserved Domains (3) summary
    COG5048
    Location:174 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:25 → 65
    KRAB; KRAB box

  5. XM_039084323.2 → XP_038940251.1  zinc finger protein 501-like isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZU10
    Conserved Domains (2) summary
    COG5048
    Location:121 → 486
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_006244395.5 → XP_006244457.1  zinc finger protein 501-like isoform X3

    See identical proteins and their annotated locations for XP_006244457.1

    UniProtKB/TrEMBL
    A0A8I5ZU10
    Conserved Domains (2) summary
    COG5048
    Location:121 → 486
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_006244396.5 → XP_006244458.1  zinc finger protein 501-like isoform X4

    See identical proteins and their annotated locations for XP_006244458.1

    Conserved Domains (3) summary
    COG5048
    Location:109 → 474
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:330 → 350
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:370 → 395
    zf-H2C2_2; Zinc-finger double domain

  8. XM_039084326.2 → XP_038940254.1  zinc finger protein 239-like isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:85 → 238
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:145 → 165
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd20908
    Location:61 → 105
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

RNA

  1. XR_010054903.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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