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Zfp1007l1 zinc finger protein 1007 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102556463, updated on 4-Jan-2025

Summary

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Official Symbol
Zfp1007l1provided by RGD
Official Full Name
zinc finger protein 1007 like 1provided by RGD
Primary source
RGD:7607957
See related
EnsemblRapid:ENSRNOG00000063563 AllianceGenome:RGD:7607957
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp1007l
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 137.6), Kidney (RPKM 98.7) and 9 other tissues See more
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Genomic context

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See Zfp1007l1 in Genome Data Viewer
Location:
9q38
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (121631445..121648621)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (114045241..114073158)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (533069..547564, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 844-like Neighboring gene zinc finger protein 950 like 17 Neighboring gene uncharacterized LOC120094820 Neighboring gene zinc finger protein 120 like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 431-like; zinc finger protein 709-like
Names
zinc finger protein 99-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    121631445..121648621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084934.2 → XP_038940862.1  zinc finger protein 431-like isoform X4

    Conserved Domains (1) summary
    pfam01352
    Location:22 → 63
    KRAB; KRAB box

  2. XM_039084935.2 → XP_038940863.1  zinc finger protein 431-like isoform X5

    Conserved Domains (1) summary
    pfam01352
    Location:22 → 63
    KRAB; KRAB box

  3. XM_039084929.2 → XP_038940857.1  zinc finger protein 431-like isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7R4
    Conserved Domains (3) summary
    COG5048
    Location:232 → 618
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:208 → 228
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 63
    KRAB; KRAB box

  4. XM_039084930.2 → XP_038940858.1  zinc finger protein 431-like isoform X2

    Related
    ENSRNOP00000097447.2, ENSRNOT00000117684.2
    Conserved Domains (3) summary
    COG5048
    Location:213 → 599
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:189 → 209
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

  5. XM_039084932.2 → XP_038940860.1  zinc finger protein 709-like isoform X3

    Related
    ENSRNOP00000086165.2, ENSRNOT00000109367.2
    Conserved Domains (2) summary
    COG5048
    Location:181 → 567
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:157 → 177
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_063267940.1 → XP_063124010.1  zinc finger protein 709-like isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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