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    Ccdc158 coiled-coil domain containing 158 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289502, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc158provided by RGD
    Official Full Name
    coiled-coil domain containing 158provided by RGD
    Primary source
    RGD:1308523
    See related
    EnsemblRapid:ENSRNOG00000002204 AllianceGenome:RGD:1308523
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308523
    Summary
    Orthologous to human CCDC158 (coiled-coil domain containing 158). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 39.3), Muscle (RPKM 18.6) and 8 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc158 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (15695456..15752896)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (15411178..15468579)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (16917138..16976240)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene shroom family member 3 Neighboring gene large ribosomal subunit protein uL30m-like Neighboring gene uncharacterized LOC134481722 Neighboring gene uncharacterized LOC120096575 Neighboring gene starch binding domain 1 Neighboring gene family with sequence similarity 47, member E Neighboring gene Y box binding protein 1, pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    coiled-coil domain containing 158; coiled-coil domain-containing protein 158

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432697.1NP_001419626.1  coiled-coil domain containing 158 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      D3ZHH5
    2. NM_001432698.1NP_001419627.1  coiled-coil domain containing 158 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
    3. NM_001432699.1NP_001419628.1  coiled-coil domain containing 158 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
    4. NM_001432700.1NP_001419629.1  coiled-coil domain containing 158 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
    5. NM_001432701.1NP_001419630.1  coiled-coil domain containing 158 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
    6. NM_001432702.1NP_001419631.1  coiled-coil domain containing 158 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
    7. NM_001432703.1NP_001419632.1  coiled-coil domain containing 158 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I6AQZ6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      15695456..15752896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273744.1XP_063129814.1  coiled-coil domain-containing protein 158 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AQZ6
    2. XM_039092669.2XP_038948597.1  coiled-coil domain-containing protein 158 isoform X2

      Related
      ENSRNOP00000003009.7, ENSRNOT00000003009.10
      Conserved Domains (1) summary
      pfam15921
      Location:11111
      CCDC158; Coiled-coil domain-containing protein 158
    3. XM_039092662.2XP_038948590.1  coiled-coil domain-containing protein 158 isoform X1

      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    4. XM_039092670.2XP_038948598.1  coiled-coil domain-containing protein 158 isoform X3

      Conserved Domains (1) summary
      pfam15921
      Location:11104
      CCDC158; Coiled-coil domain-containing protein 158
    5. XM_063273741.1XP_063129811.1  coiled-coil domain-containing protein 158 isoform X2

    6. XM_039092663.2XP_038948591.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Related
      ENSRNOP00000096558.2, ENSRNOT00000109423.2
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    7. XM_063273742.1XP_063129812.1  coiled-coil domain-containing protein 158 isoform X2

    8. XM_039092666.2XP_038948594.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    9. XM_063273743.1XP_063129813.1  coiled-coil domain-containing protein 158 isoform X3

    10. XM_039092668.2XP_038948596.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    11. XM_039092672.2XP_038948600.1  coiled-coil domain-containing protein 158 isoform X4

      Conserved Domains (1) summary
      pfam15921
      Location:1388
      CCDC158; Coiled-coil domain-containing protein 158
    12. XM_039092673.2XP_038948601.1  coiled-coil domain-containing protein 158 isoform X5

      Conserved Domains (1) summary
      pfam15921
      Location:1342
      CCDC158; Coiled-coil domain-containing protein 158
    13. XM_063273746.1XP_063129816.1  coiled-coil domain-containing protein 158 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AQZ6
    14. XM_063273747.1XP_063129817.1  coiled-coil domain-containing protein 158 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AQZ6
    15. XM_039092667.2XP_038948595.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    16. XM_039092664.2XP_038948592.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158
    17. XM_039092665.2XP_038948593.1  coiled-coil domain-containing protein 158 isoform X1

      UniProtKB/TrEMBL
      D3ZHH5
      Conserved Domains (1) summary
      pfam15921
      Location:11052
      CCDC158; Coiled-coil domain-containing protein 158