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    Cimip7 ciliary microtubule inner protein 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680045, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cimip7provided by RGD
    Official Full Name
    ciliary microtubule inner protein 7provided by RGD
    Primary source
    RGD:1596842
    See related
    AllianceGenome:RGD:1596842
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    C8h3orf84
    Summary
    Orthologous to human C3orf84 (chromosome 3 open reading frame 84). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 109.2) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cimip7 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118002336..118019337)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109131138..109140784)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117214999..117231024)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene interactor of HORMAD1 1 Neighboring gene uncharacterized LOC134480234 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene kelch domain containing 8B Neighboring gene coiled-coil domain containing 71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C3orf84 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109389.1 → NP_001102859.1  uncharacterized protein C3orf84 homolog

      See identical proteins and their annotated locations for NP_001102859.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473954
      UniProtKB/TrEMBL
      A0A8I6AI70, A6I353
      Conserved Domains (1) summary
      pfam15115
      Location:7 → 115
      HDNR; Domain of unknown function with conserved HDNR motif

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      118002336..118019337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266114.1 → XP_063122184.1  uncharacterized protein C3orf84 homolog isoform X2

    2. XM_063266113.1 → XP_063122183.1  uncharacterized protein C3orf84 homolog isoform X1

      UniProtKB/TrEMBL
      M0RA70
    Nucleotide Protein Strain
    Heading Accession and Version

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