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    Tex10 testis expressed 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298065, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tex10provided by RGD
    Official Full Name
    testis expressed 10provided by RGD
    Primary source
    RGD:1312045
    See related
    EnsemblRapid:ENSRNOG00000008618 AllianceGenome:RGD:1312045
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 83.9), Spleen (RPKM 74.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tex10 in Genome Data Viewer
    Location:
    5q22
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (67557770..67603904, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (62762230..62808373, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (64179247..64225844, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum protein 44 Neighboring gene inversin Neighboring gene uncharacterized LOC102551711 Neighboring gene uncharacterized LOC108350968 Neighboring gene Myb/SANT DNA binding domain containing 3 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of MLL1 complex  
    part_of MLL1 complex  
    located_in mitochondrion  
    located_in mitochondrion  
    located_in nucleoplasm  
    is_active_in nucleus  

    General protein information

    Preferred Names
    testis-expressed protein 10
    Names
    testis expressed gene 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106653.1NP_001100123.1  testis-expressed protein 10

      See identical proteins and their annotated locations for NP_001100123.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474056
      UniProtKB/TrEMBL
      A0A8I6AC27, A6KJF4, D4A401
      Related
      ENSRNOP00000011401.5, ENSRNOT00000011401.7
      Conserved Domains (1) summary
      pfam12333
      Location:132235
      Ipi1_N; Rix1 complex component involved in 60S ribosome maturation

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      67557770..67603904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109450.2XP_038965378.1  testis-expressed protein 10 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AC27, A6KJF4, D4A401
      Conserved Domains (1) summary
      pfam12333
      Location:132235
      Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
    2. XM_006238034.5XP_006238096.1  testis-expressed protein 10 isoform X1

      See identical proteins and their annotated locations for XP_006238096.1

      UniProtKB/TrEMBL
      A0A8I6AC27, A6KJF4, D4A401
      Conserved Domains (1) summary
      pfam12333
      Location:132235
      Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
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