U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zbbx zinc finger, B-box domain containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361964, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Zbbxprovided by RGD
    Official Full Name
    zinc finger, B-box domain containingprovided by RGD
    Primary source
    RGD:1308632
    See related
    EnsemblRapid:ENSRNOG00000009792 AllianceGenome:RGD:1308632
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308632
    Summary
    Predicted to enable zinc ion binding activity. Orthologous to human ZBBX (zinc finger B-box domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 198.0), Lung (RPKM 34.0) and 1 other tissue See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zbbx in Genome Data Viewer
    Location:
    2q32
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (162134252..162245538, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (159835257..159946926, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (173453609..173565422, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene RNA, U2 small nuclear 60 Neighboring gene voltage-dependent anion channel 1, pseudogene 7 Neighboring gene uncharacterized LOC120100849 Neighboring gene serpin family I member 2 Neighboring gene WD repeat domain 49 Neighboring gene keratin, type II cytoskeletal 8-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC114436

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger B-box domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001029922.2 → NP_001025093.2  zinc finger B-box domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AM74
      Related
      ENSRNOP00000093635.1, ENSRNOT00000095617.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      162134252..162245538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282111.1 → XP_063138181.1  zinc finger B-box domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8I6AM74

    2. XM_063282109.1 → XP_063138179.1  zinc finger B-box domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K3P2, A0A8I6AM74

    3. XM_063282110.1 → XP_063138180.1  zinc finger B-box domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AM74

    4. XM_008761104.4 → XP_008759326.1  zinc finger B-box domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AM74
      Related
      ENSRNOP00000108970.1, ENSRNOT00000166703.1
      Conserved Domains (1) summary
      smart00336
      Location:130 → 175
      BBOX; B-Box-type zinc finger

    5. XM_039102633.2 → XP_038958561.1  zinc finger B-box domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AM74
      Conserved Domains (2) summary
      PRK08581
      Location:448 → 689
      PRK08581; amidase domain-containing protein
      cd19818
      Location:133 → 175
      Bbox1_ZBBX; B-box-type 1 zinc finger found in zinc finger B-box domain-containing protein 1 (ZBBX) and similar proteins

    6. XM_017590970.3 → XP_017446459.1  zinc finger B-box domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AM74

    7. XM_008761103.4 → XP_008759325.1  zinc finger B-box domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K3P2, A0A8I6AM74
      Related
      ENSRNOP00000072719.2, ENSRNOT00000081423.3
      Conserved Domains (1) summary
      smart00336
      Location:130 → 175
      BBOX; B-Box-type zinc finger

    8. XM_006232495.5 → XP_006232557.1  zinc finger B-box domain-containing protein 1 isoform X7

      See identical proteins and their annotated locations for XP_006232557.1

      UniProtKB/TrEMBL
      A0A8I6AM74
      Conserved Domains (1) summary
      smart00336
      Location:13 → 58
      BBOX; B-Box-type zinc finger

    9. XM_063282114.1 → XP_063138184.1  zinc finger B-box domain-containing protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8I6AM74

    10. XM_063282113.1 → XP_063138183.1  zinc finger B-box domain-containing protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8I6AM74

    11. XM_063282112.1 → XP_063138182.1  zinc finger B-box domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8I6AM74

    12. XM_006232496.5 → XP_006232558.1  zinc finger B-box domain-containing protein 1 isoform X7

      See identical proteins and their annotated locations for XP_006232558.1

      UniProtKB/TrEMBL
      A0A8I6AM74
      Conserved Domains (1) summary
      smart00336
      Location:13 → 58
      BBOX; B-Box-type zinc finger

    13. XM_063282115.1 → XP_063138185.1  zinc finger B-box domain-containing protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8I6AM74
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools