U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC118804665 NACHT, LRR and PYD domains-containing protein 3-like [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118804665, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC118804665
    Gene description
    NACHT, LRR and PYD domains-containing protein 3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC118804665 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023496052.1 (198199..295625)

    NW_023496052.1Genomic Context describing neighboring genes Neighboring gene ribonuclease inhibitor-like Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_023496052 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    NACHT, LRR and PYD domains-containing protein 3-like; NACHT, LRR and PYD domains-containing protein 5-like; NLR family CARD domain-containing protein 3-like; protein NLRC5-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023496052.1 Reference Colossoma_macropomum

      Range
      198199..295625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036565240.1 → XP_036421133.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X2

      Conserved Domains (7) summary
      sd00033
      Location:1082 → 1110
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1400 → 1424
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:534 → 700
      NACHT; NACHT domain
      pfam14484
      Location:451 → 525
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:839 → 967
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:783 → 837
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1489 → 1815
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    2. XM_036565244.1 → XP_036421137.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X6

      Conserved Domains (8) summary
      PTZ00449
      Location:12 → 278
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00033
      Location:981 → 1009
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1358 → 1382
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:460 → 626
      NACHT; NACHT domain
      pfam14484
      Location:377 → 451
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:765 → 893
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:709 → 763
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1447 → 1773
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    3. XM_036565237.1 → XP_036421130.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X1

      Conserved Domains (7) summary
      sd00033
      Location:1055 → 1083
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1432 → 1456
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:534 → 700
      NACHT; NACHT domain
      pfam14484
      Location:451 → 525
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:839 → 967
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:783 → 837
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1521 → 1847
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    4. XM_036565243.1 → XP_036421136.1  protein NLRC5-like isoform X5

      Conserved Domains (7) summary
      sd00033
      Location:1055 → 1083
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1432 → 1456
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:534 → 700
      NACHT; NACHT domain
      pfam14484
      Location:451 → 525
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:839 → 967
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:783 → 837
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1084 → 1382
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    5. XM_036565241.1 → XP_036421134.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X3

      Conserved Domains (7) summary
      sd00033
      Location:1018 → 1046
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1395 → 1419
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:497 → 663
      NACHT; NACHT domain
      pfam14484
      Location:414 → 488
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:802 → 930
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:746 → 800
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1484 → 1810
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    6. XM_036565242.1 → XP_036421135.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X4

      Conserved Domains (7) summary
      sd00033
      Location:1018 → 1046
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1395 → 1419
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:497 → 663
      NACHT; NACHT domain
      pfam14484
      Location:414 → 488
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:802 → 930
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:746 → 800
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1484 → 1810
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    7. XM_036565246.1 → XP_036421139.1  NACHT, LRR and PYD domains-containing protein 3-like isoform X8

      Conserved Domains (7) summary
      sd00033
      Location:870 → 898
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1247 → 1271
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:349 → 515
      NACHT; NACHT domain
      pfam14484
      Location:266 → 340
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:654 → 782
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:598 → 652
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1336 → 1662
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    8. XM_036565239.1 → XP_036421132.1  NACHT, LRR and PYD domains-containing protein 5-like isoform X1

      Conserved Domains (7) summary
      sd00033
      Location:1055 → 1083
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1432 → 1456
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:534 → 700
      NACHT; NACHT domain
      pfam14484
      Location:451 → 525
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:839 → 967
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:783 → 837
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1521 → 1847
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    9. XM_036565245.1 → XP_036421138.1  NLR family CARD domain-containing protein 3-like isoform X7

      Conserved Domains (7) summary
      sd00033
      Location:938 → 966
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1315 → 1339
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:417 → 583
      NACHT; NACHT domain
      pfam14484
      Location:334 → 408
      FISNA; Fish-specific NACHT associated domain
      pfam17776
      Location:722 → 850
      NLRC4_HD2; NLRC4 helical domain HD2
      pfam17779
      Location:666 → 720
      NOD2_WH; NOD2 winged helix domain
      cl39015
      Location:1404 → 1730
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases