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    Spata6l spermatogenesis associated 6-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361747, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spata6lprovided by RGD
    Official Full Name
    spermatogenesis associated 6-likeprovided by RGD
    Primary source
    RGD:1310039
    See related
    EnsemblRapid:ENSRNOG00000015137 AllianceGenome:RGD:1310039
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310039
    Summary
    Predicted to enable myosin light chain binding activity. Predicted to be involved in spermatogenesis. Predicted to be located in sperm head-tail coupling apparatus. Orthologous to human SPATA6L (spermatogenesis associated 6 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 106.7), Heart (RPKM 29.7) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spata6l in Genome Data Viewer
    Location:
    1q52
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (236042960..236096530, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (226630470..226682979, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (247037004..247088124, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098084 Neighboring gene uncharacterized LOC102546345 Neighboring gene RNA, U6 small nuclear 525 Neighboring gene solute carrier family 1 member 1 Neighboring gene phytanoyl-CoA 2-hydroxylase, pseudogene 1 Neighboring gene phospholipid phosphatase 6 Neighboring gene tektin 5 like 1 Neighboring gene cell division cycle 37-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables myosin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in sperm head-tail coupling apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis associated 6-like protein
    Names
    uncharacterized protein C9orf68 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014165.1 → NP_001014187.1  spermatogenesis associated 6-like protein

      See identical proteins and their annotated locations for NP_001014187.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079024
      UniProtKB/Swiss-Prot
      Q6AYJ3
      UniProtKB/TrEMBL
      A0A8L2QBD4
      Related
      ENSRNOP00000020464.6, ENSRNOT00000020464.6
      Conserved Domains (1) summary
      pfam14909
      Location:7 → 145
      SPATA6; Spermatogenesis-assoc protein 6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      236042960..236096530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268600.1 → XP_063124670.1  spermatogenesis associated 6-like protein isoform X4

      UniProtKB/TrEMBL
      A0A8L2QBD4

    2. XM_008760342.4 → XP_008758564.2  spermatogenesis associated 6-like protein isoform X3

      UniProtKB/Swiss-Prot
      Q6AYJ3
      UniProtKB/TrEMBL
      A0A8L2QBD4
      Related
      ENSRNOP00000104812.1, ENSRNOT00000173823.1
      Conserved Domains (1) summary
      pfam14909
      Location:7 → 145
      SPATA6; Spermatogenesis-assoc protein 6

    3. XM_063268606.1 → XP_063124676.1  spermatogenesis associated 6-like protein isoform X6

    4. XM_039084401.2 → XP_038940329.1  spermatogenesis associated 6-like protein isoform X2

      Conserved Domains (1) summary
      pfam14909
      Location:7 → 165
      SPATA6; Spermatogenesis-assoc protein 6

    5. XM_039084395.2 → XP_038940323.1  spermatogenesis associated 6-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8I6AE03
      Related
      ENSRNOP00000090234.1, ENSRNOT00000094772.2
      Conserved Domains (1) summary
      pfam14909
      Location:7 → 165
      SPATA6; Spermatogenesis-assoc protein 6

    6. XM_039084414.2 → XP_038940342.1  spermatogenesis associated 6-like protein isoform X7

      Conserved Domains (1) summary
      pfam14909
      Location:22 → 173
      SPATA6; Spermatogenesis-assoc protein 6

    7. XM_006231237.5 → XP_006231299.1  spermatogenesis associated 6-like protein isoform X5

      UniProtKB/TrEMBL
      A0A8I6AS81, A0A8L2QBD4
      Related
      ENSRNOP00000102083.1, ENSRNOT00000161610.1
      Conserved Domains (1) summary
      pfam14909
      Location:22 → 153
      SPATA6; Spermatogenesis-assoc protein 6

    RNA

    1. XR_005489004.2 RNA Sequence

    2. XR_010055142.1 RNA Sequence

    3. XR_010055143.1 RNA Sequence

    4. XR_010055144.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AYJ3.1 GenPept UniProtKB/Swiss-Prot:Q6AYJ3

    Gene LinkOut

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