|
| Status |
Public on Nov 28, 2024 |
| Title |
Enrichment of CBP80-associated and eIF4E-associated linear RNAs in SMG6 depleted cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
One-color microarray experiment comparing the enrichment of CBP80-associated and eIF4E-associated linear RNAs.
|
| |
|
| Overall design |
Relative enrichement of each linear RNAs in CBP80/eIF4E IP analyzed and normalized. Relative ratio (SMG6 siRNA/Control siRNA) was calculated.
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| |
|
| Contributor(s) |
Boo S, Shin M, Hwang H, Kim Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 03, 2023 |
| Last update date |
Nov 28, 2024 |
| Contact name |
Sung Ho Boo |
| Organization name |
Korea Advanced Institute of Science and Technology
|
| Street address |
291, Daehak-ro
|
| City |
Daejeon |
| ZIP/Postal code |
KS015 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL16686 |
[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] |
|
| Samples (12)
|
| GSM7678282 |
Linear RNA_siControl_CBP80IP_biological rep1 |
| GSM7678283 |
Linear RNA_siControl_eIF4EIP_biological rep1 |
| GSM7678284 |
Linear RNA_siSMG6_CBP80IP_biological rep1 |
| GSM7678285 |
Linear RNA_siSMG6_eIF4EIP_biological rep1 |
| GSM7678286 |
Linear RNA_siControl_CBP80IP_biological rep2 |
| GSM7678287 |
Linear RNA_siControl_eIF4EIP_biological rep2 |
| GSM7678288 |
Linear RNA_siSMG6_CBP80IP_biological rep2 |
| GSM7678289 |
Linear RNA_siSMG6_eIF4EIP_biological rep2 |
| GSM7678290 |
Linear RNA_siControl_BeforeIP_biological rep1 |
| GSM7678291 |
Linear RNA_siSMG6_BeforeIP_biological rep1 |
| GSM7678292 |
Linear RNA_siControl_BeforeIP_biological rep2 |
| GSM7678293 |
Linear RNA_siSMG6_BeforeIP_biological rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE240092 |
Circular RNAs affect mRNA stability |
|
| Relations |
| BioProject |
PRJNA1001825 |
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