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Sample GSM17229 Query DataSets for GSM17229
Status Public on Mar 01, 2004
Title Adipose tissue 1 (6 weeks of age)
Sample type RNA
 
Channel 1
Source name Adipose tissue (6 weeks of age) of ZDF (Cy5)
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name Adipose tissue (6 weeks of age) of ZLC (Cy3)
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Gene expression profiles in adipose tissue of Zucker diabetic fatty (ZDF) rats at 6 weeks of age (pre-diabetic) compared with age matched Zucker lean control (ZLC) rats.
Keywords = ZDF
 
Submission date Feb 26, 2004
Last update date May 28, 2005
Contact name MyeongHo Jung
E-mail(s) [email protected]
Phone 82-2-380-1530
Fax 82-2-354-1057
Organization name National Institute of Health
Department Biomedical Sciences
Lab Metabolic Diseases
Street address 5 Nokbun-dong, Eunpyung-gu
City Seoul
ZIP/Postal code 122-701
Country South Korea
 
Platform ID GPL1002
Series (1)
GSE1080 Zucker diabetic fatty (ZDF)/Zucker lean control (ZLC) comparisons

Data table header descriptions
ID_REF
VALUE Log2 ratio of normalized mean intensity of Cy5(N635_Mean) to normalized mean intensity of Cy3(N532_Mean)
N635_Mean The normalized mean intensity of Cy5 calculated by subtracting the Cy5 mean background intensity taken from a standard area around the spot from the Cy5 emission in the pixels at each spot after laser excitation, and normalized to their overall mean, and then re-scaled to produce an overall geometric mean Cy5/Cy3 ratio of 1 for the array.
N532_Mean The normalized mean intensity of Cy3 calculated by subtracting the Cy3 mean background intensity taken from a standard area around the spot from the Cy3 emission in the pixels at each spot after laser excitation, and normalized to their overall mean, and then re-scaled to produce an overall geometric mean Cy5/Cy3 ratio of 1 for the array.
F635_Flag Flag data from Cy5 channel. The indication of spot quality determined by the image analysis software. Unflaged spot was assigned a value of zero. A negative value was assigned to a spot with intensity near background, uneven spot or background intensity.
F635_Mean Cy5 channel average intensity of the spot.
B635_Mean Cy5 channel background average intensity around the spot.
F635_Median Cy5 channel median intensity of the spot.
B635_Median Cy5 channel background median intensity around the spot.
F635_SD The standard deviation calculated for the Cy5 channel mean intensity of the spot.
B635_SD The standard deviation calculated for the Cy5 channel background average intensity around the spot.
F532_Flag Flag data from Cy3 channel. The indication of spot quality determined by the image analysis software. Unflaged spot was assigned a value of zero. A negative value was assigned to a spot with intensity near background, uneven spot or background intensity.
F532_Mean Cy3 channel average intensity of the spot.
B532_Mean Cy3 channel background average intensity around the spot.
F532_Median Cy3 channel median intensity of the spot.
B532_Median Cy3 channel background median intensity around the spot.
F532_SD The standard deviation calculated for the Cy3 channel mean intensity of the spot.
B532_SD The standard deviation calculated for the Cy3 channel background average intensity around the spot.

Data table
ID_REF VALUE N635_Mean N532_Mean F635_Flag F635_Mean B635_Mean F635_Median B635_Median F635_SD B635_SD F532_Flag F532_Mean B532_Mean F532_Median B532_Median F532_SD B532_SD
1 0.0104 -2.1634 -2.1657 0 296.4320988 47.96171171 250 0 233.9497117 112.250628 0 473.3409091 192.8571429 433.5 140 326.4469846 221.1271169
2 -0.5638 0.2096 0.7815 0 1335.338462 48.20616114 1240.5 0 684.412736 101.9671337 0 2360.934426 197.6023256 2275 146.5 986.5770826 217.8776006
3 -0.4393 -0.1941 0.2532 0 1016.850467 43.93127962 993 0 569.4281572 117.6298819 0 1725.16 225.1701632 1594 144 754.4083075 268.4152776
4 -2.2249 0 278.1153846 40.02439024 229 0 208.329127 80.3042818 0 356.091954 209.4036281 293 175 266.9600957 193.9478163
5 -0.016 2.7533 2.7774 0 7549.07971 44.21014493 7965.5 0 4842.955666 92.03783508 0 8839.04 210.5948478 9397 164 4345.291628 200.756012
6 -0.0552 0.3715 0.4347 0 1479.896 39.98324022 1393 0 972.5249103 84.40640414 0 1918.127451 217.0183727 1792.5 147 784.0635062 243.0192029
7 0.3976 2.1658 1.7763 0 5056.272 61.94613583 5662 0 2427.287373 158.2408102 0 4509.631579 198.7237443 4670 150.5 1655.304198 217.234757
8 3 7055.169492 57.35714286 7915 0 3545.092118 143.3776043 3 6408.126126 193.3514739 7082 147 2797.844776 225.0222086
9 0.0332 1.1202 1.0951 0 2454.25 34.78271605 2469 0 1485.279878 73.28292677 0 2869.165217 180.6859903 2855 137.5 1386.023646 180.2180053
10 0.0973 3.046 2.9567 0 9233.02439 40.25247525 11266 0 5530.022949 93.99260356 0 9973.921569 203.1384977 10894 146 4027.850472 236.2663256
11 0.1579 1.3115 1.1616 0 2796.090909 33.47252747 3273 0 1623.337191 78.04387899 0 3005.168317 189.72 2992 143 1213.507543 204.4362197
12 0.248 -0.0685 -0.3084 0 1102.383838 40.93081761 1059 0 575.6762331 88.45324384 0 1201.151163 184.8530612 1180 143.5 494.1089353 182.8823611
13 0.8184 3.5674 2.7571 0 13238.40441 43.54567308 14965 0 8475.233438 98.22821167 0 8706.224138 198.3623853 9176.5 148 4275.562585 225.324408
14 -0.014 2.073 2.0951 0 4731.423729 48.00437637 5197.5 0 2608.910671 95.14981842 0 5581.585859 204.4612159 6133 144 2212.047865 221.6295119
15 3 1261.979592 27.37002342 1142 0 842.8191757 62.40225211 3 1256.542857 203.356044 1069 144 992.5389908 232.4674351
16 -0.0148 1.2951 1.318 0 2774.571429 43.10909091 2960 0 1347.806033 96.89568857 0 3346.469388 208.7797357 3505.5 155.5 1356.168667 221.2823061
17 0.1608 2.918 2.7652 0 8454.577236 42.29139073 9707 0 4933.656282 83.57602897 0 8760.056075 203.8358209 9973 146 3582.970852 236.5724074
18 3 2026.585859 40.54883721 2068 0 990.4710338 87.91082261 3 2201.358974 227.1751663 2209.5 167 798.9137493 253.6760647
19 -0.0106 -0.8734 -0.8547 0 683.3163265 75.74004684 635.5 0 332.903847 127.661714 0 931.0487805 235.1006711 930 194 332.6362879 216.0362182
20 3 8545.931034 68.85652174 9294 0 4080.19321 126.2674743 3 8197.233645 276.9616205 8308 235 3190.799767 277.0809128

Total number of rows: 5184

Table truncated, full table size 699 Kbytes.




Supplementary data files not provided
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