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GEO accession:
Sample GSM68890
Query DataSets for GSM68890
Status
Public on Nov 18, 2005
Title
3 h control replicate 2
Sample type
RNA
Source name
shoot tissue
Organism
Hordeum vulgare
Characteristics
cv. Morex
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were used for RNA extraction
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
control
Data processing
GCOS 1.2
Submission date
Aug 09, 2005
Last update date
Aug 09, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
[email protected]
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL1340
Series (1)
GSE3097
Barley1 salinity stress study
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
216.6
P
0.018281
AFFX-BioB-M_at
258.9
P
0.000754
AFFX-BioB-3_at
140.1
P
0.000857
AFFX-BioC-5_at
493.1
P
0.000754
AFFX-BioC-3_at
358.2
P
0.00034
AFFX-BioDn-5_at
353.7
P
0.00039
AFFX-BioDn-3_at
3293.3
P
0.000147
AFFX-CreX-5_at
4997.4
P
0.000044
AFFX-CreX-3_at
11463.1
P
0.000044
AFFX-DapX-5_at
24.3
A
0.41138
AFFX-DapX-M_at
20.6
A
0.239063
AFFX-DapX-3_at
5.6
A
0.921998
AFFX-LysX-5_at
3.9
A
0.824672
AFFX-LysX-M_at
69.5
A
0.52976
AFFX-LysX-3_at
6.1
A
0.5
AFFX-PheX-5_at
4.7
A
0.910522
AFFX-PheX-M_at
7.6
A
0.824672
AFFX-PheX-3_at
28.7
A
0.686277
AFFX-ThrX-5_at
10.2
A
0.937071
AFFX-ThrX-M_at
62.2
A
0.165861
Total number of rows:
22840
Table truncated, full table size
705 Kbytes
.
Supplementary data files not provided
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