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Sample GSM7256643 Query DataSets for GSM7256643
Status Public on Apr 30, 2023
Title TF ChIP-seq from HepG2 (ENCLB681HII)
Sample type SRA
 
Source name Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TARDBP
Organism Homo sapiens
Characteristics antibody: TARDBP
line: HepG2
biomaterial_type: cell line
biosample encode accession: ENCBS266OBE (SAMN34251592)
Sex: male
health state: hepatocellular carcinoma
dev stage: child
age: 15 year
donor_id: ENCDO000AAC
lab: Richard Myers, HAIB
source: Richard Myers
link: ENCBS266OBE at ENCODE; https://www.encodeproject.org/ENCBS266OBE/
link: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
Extracted molecule genomic DNA
Extraction protocol pipeline protocol: https://www.encodeproject.org/documents/efac5344-6834-4e12-b971-94994d992e86/@@download/attachment/ChIP-seq_Mapping_Pipeline_Overview.pdf
pipeline protocol: https://www.encodeproject.org/documents/d00ffce2-e72c-44d7-a71f-73fd163c2426/@@download/attachment/ChIP-seq_pipeline_overview.pdf
extraction protocol: https://www.encodeproject.org/documents/73c95206-fc02-41ea-93e0-a929a6939aaf/@@download/attachment/ChIP-seq%20protocol%2C%20ENCODE4%2C%20Myers%20Lab.pdf
pipeline protocol: https://www.encodeproject.org/documents/efac5344-6834-4e12-b971-94994d992e86/@@download/attachment/ChIP-seq_Mapping_Pipeline_Overview.pdf, pipeline protocol: https://www.encodeproject.org/documents/d00ffce2-e72c-44d7-a71f-73fd163c2426/@@download/attachment/ChIP-seq_pipeline_overview.pdf, extraction protocol: https://www.encodeproject.org/documents/73c95206-fc02-41ea-93e0-a929a6939aaf/@@download/attachment/ChIP-seq%20protocol%2C%20ENCODE4%2C%20Myers%20Lab.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina NovaSeq 6000
 
Description https://www.encodeproject.org/experiments/ENCSR998LUY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR998LUY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB681HII
fragmentation methods: sonication (generic)
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Apr 28, 2023
Last update date Jul 07, 2023
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL24676
Series (1)
GSE231300 TF ChIP-seq from HepG2 (ENCSR998LUY)
Relations
BioSample SAMN34251592
SRA SRX20151094
Named Annotation GSM7256643_ENCFF751QFH_signal_p-value_GRCh38.bigWig
Named Annotation GSM7256643_ENCFF713VEX_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM7256643_ENCFF061BNH_IDR_thresholded_peaks_GRCh38.bigBed 982.3 Kb (ftp)(http) BIGBED
GSM7256643_ENCFF713OOD_IDR_thresholded_peaks_GRCh38.bed.gz 446.6 Kb (ftp)(http) BED
GSM7256643_ENCFF713VEX_fold_change_over_control_GRCh38.bigWig 546.5 Mb (ftp)(http) BIGWIG
GSM7256643_ENCFF751QFH_signal_p-value_GRCh38.bigWig 461.9 Mb (ftp)(http) BIGWIG
GSM7256643_ENCFF995ZIM_IDR_ranked_peaks_GRCh38.bed.gz 5.5 Mb (ftp)(http) BED
GSM7256643_ENCLB681HII_README.txt.gz 1.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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