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NCBI Reference Sequence: XM_006239342.5
FASTA Graphics
LOCUS XM_006239342 3635 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus PRAME family member 27 (Pramef27), transcript variant X1, mRNA. ACCESSION XM_006239342 VERSION XM_006239342.5 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086023) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_006239342.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3635 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..3635 /gene="Pramef27" /gene_synonym="Pramel1" /note="PRAME family member 27; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 15 long SRA reads, 2 Proteins" /db_xref="GeneID:691051" /db_xref="RGD:1588644" CDS 176..1552 /gene="Pramef27" /gene_synonym="Pramel1" /codon_start=1 /product="PRAME family member 27 isoform X1" /protein_id="XP_006239404.1" /db_xref="GeneID:691051" /db_xref="RGD:1588644" /translation="MSCKTPPVLQELAEDSLLKNQALAVAALDDLPSLFFPSLFKKAC RHRLVGIIKAMVQAWPFPCLPLGAMVSRKTAYRRILEIVLYGFDALLFQEVPHRRCKL KVLDLRVMPLKLWNRLPVFGTAGCSENPAVLGHSGTRVKQPVKVLVDMVLKESPLDST EAFLVQWVDSRSGLVKLCCCKLQIWAMSIYYHRKLLEILDLDSIQELRVYCISNPVCL LNFAPYLGRMRNLRCLILSHLWQAFSMTPVEKQQVITQFTSQFLKLKCLQILHLDTVF FLEGHLDELFWWLKTPLETLSVIDCNLSKSDWIHISEFQCTSQLKHLNLKWVKLTHLS PEPLRILLLKSASTLISLDLEGCQMMDSQLSAILPALRCCTQLTKFNFHGNYISMPIL RELAHNVVKQKSHPSKIHFIPSCDHHSGLDFEVISQPHIVFVDVERTTGQQEQVLFYA VCSGEYVL" polyA_site 3635 /gene="Pramef27" /gene_synonym="Pramel1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgaacgttg tgtaaaagct tccgagacca cgagagcgct gcggcttcct gttaagtctt 61 tgggagtttg aggccagccg gggagacaga ggaaccgcag ggccctgctg cggctcagag 121 acctctttcg tccgtccatc tctggaatcc tcttcccgaa gattgatccg tcaggatgag 181 ctgcaagacc ccacctgtac tccaggagct ggcagaggac agcctcctga aaaaccaggc 241 cttggctgtc gccgctctgg atgacctgcc ctcacttttc ttcccgtcgc tgttcaaaaa 301 ggcctgcaga cacagactgg ttgggatcat caaggcgatg gtgcaggctt ggcccttccc 361 ctgccttcca ctgggggcca tggtcagtag gaagactgcc taccggagaa tcttagagat 421 tgtcctgtat ggcttcgatg ctttgctttt ccaggaagtt ccccacagga ggtgcaagct 481 gaaagtgctg gatttacggg tcatgccttt gaagctgtgg aacaggttgc ccgtgttcgg 541 gactgctggc tgtagtgaga atccagcagt gctgggccat tcaggaacac gggtgaaaca 601 gccagtgaag gtgctggtag acatggtcct caaggagagc ccgctagatt ccacggaggc 661 cttcctcgtt caatgggtag acagcaggag tggtttggtg aagctgtgct gttgcaagct 721 gcagatctgg gcaatgtcca tttactacca tcggaaactc ttggagatct tggatctgga 781 ctctatccag gagctgcgtg tatactgcat cagcaatccc gtctgcctgc taaacttcgc 841 cccttacctg ggccgcatga ggaacctgcg ctgtctcatt ctctctcacc tctggcaggc 901 cttctccatg actccagtgg agaagcagca ggtcatcacc cagttcacct ctcagttcct 961 taaactgaaa tgcctccaga tcctgcatct ggacactgtc ttcttcctag agggccatct 1021 ggatgagcta ttctggtggc taaagacacc cttagagacc ctgtcagtga ttgattgtaa 1081 tctctcaaaa tcagactgga tccatatatc cgagttccag tgcacaagtc agctaaaaca 1141 cctgaatttg aaatgggtca aactcaccca tttgagccca gagcccctga gaattctgtt 1201 actgaaatct gcatctaccc tgatttccct ggatttggag ggctgtcaaa tgatggactc 1261 ccagctcagt gccatcctac ctgccctgag atgctgtaca cagctcacca agtttaattt 1321 ccacgggaac tacatctcca tgcctatcct gagggaactg gcacataacg tcgtcaagca 1381 gaaatcccac ccgtcaaaga tccactttat cccaagctgt gatcatcaca gtggtctgga 1441 cttcgaagtc atttctcagc ctcatattgt gtttgtagat gtggagagga ctactgggca 1501 gcaagaacag gtcttgtttt atgctgtctg ctctggagaa tatgtgttgt gatgtccctc 1561 tgatgggttg ggacttgttg ggcatctcta atgagatgca gattgatgct ctcctgtgga 1621 cactgggagg tggagggcaa tacacaggtg ccatctggtc agagtatgtc caacacatgg 1681 ttttacactg ttgttcttct gagtggtagg gaaattgatg ctagagtgca aaaaagtgag 1741 agtgtttgac atagggagtg tgagacatcg acagacatca tgggttctgg ttgggcaggt 1801 gcaaaagggc attcctccag cctggtggtt ttcggatttt atggtggaaa acgggactgg 1861 cccacttgga tgatttgagt cctgtgactg ctggaaacaa acttgaactc ctggttcttc 1921 tgctcttggc ttctgcgtgc tgagcttaga ctcaaaaccc catacctggt tccttacagc 1981 tcctttaaca tcgtggctgt gcataggttt tctagtccaa cactaacatt gagtagcagt 2041 ttttgtggga ctagagagat ggacttagca gttgagaaca cttgatgctt tttgtagaga 2101 acctgggttt gattgattcc ccagatccac atggtggctc agccaaccag aactactcac 2161 agggcacacg aggcatgagt gtggtgcatt agtcttgcgt atacgtgaaa cactcaggca 2221 tgtacatctg aaataattta aatactggtt tgtattgctg acaccgaatg tcttgggtca 2281 gccagcaccc agcattactg tgacagacac tgttaagtca tatatttata ctcataaaat 2341 gccacttatg agcttaggaa attgaaccag gaatgtgtgg acaagtggac aaactctagc 2401 agaaaaaaaa gaaaccaagc ttttatgaca atattagaca ccctagacca ctgttggatg 2461 cagttcccat cctgattcat ctaaagaggg acatcaggta ctggggccat gataatgtgt 2521 gttctcaggc tgggttgata caagctctga ctctgtccct aggctgcaac atgacatccc 2581 ccactgctgg gcctctttaa ttgttttgtg gttagtgtgt tgtctctcca aatgaggctg 2641 tggttaaacc tcaggtggtg tgtatcatgc tcactccttc ccttgacaag actttcatgg 2701 aaccagaagc ttgatggttc acctagacct agacctgtta gccagagggc tcccatgggt 2761 ctgccggtct ctgctggagc tgcaggctca tgcctctgtg actgaccttt cttatttctt 2821 ttttcttttc tttctttttt cttctttttg agacagggtc tccatacaga cctgttagag 2881 aactcattag accagacggg cctcagtcaa aaattccacc ttgattacag ttgtacgccc 2941 tgtgccgggc tagtgtccct gtttaattta gtgggtggaa ttggccttac atgttgaccc 3001 atccctacct cctgattgtt aggattatga gtgtaaatgc cacacgtggt tttatgcttt 3061 ttctggggat tggaccgaaa gcttttcatt atacagcatc tgttcacatg tccagtggtg 3121 cctgtgtggg ggtcaggaca atttgtatga gttggaactc ctaccatgtg gggcttggga 3181 gttgaattga catgacagcc atctctgtgg tctgaaccta tagcgtcttg cttgcaaacg 3241 ttctgcaccc tgagctacat ccacagcctg tccctttaat ccccccccca ctcccaccca 3301 ggaatttgtt gtgtaaccag gccagtctca actcacggag atccatggcc tgcctctgct 3361 tcccagtgct gggatgaaag gcccgcccat ctaagcctgg catcgccaat tctttcttct 3421 tgtcctggtt ggtttttgtt tttgtttttt gttttttgtt tttttttttg cctccatatc 3481 atttcctgta gtgcaatgca tggttaagat tggaaagaaa gcttgaattg ttagtggctg 3541 tgattcgcaa gtgaaattac agtatttagt ggattataca catcaaagtt ggtgtagcct 3601 gttgatttgt tcaataaatt ctgatgttat ctaaa //
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