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PREDICTED: Rattus norvegicus PRAME family member 27 (Pramef27), transcript variant X1, mRNA

NCBI Reference Sequence: XM_006239342.5

FASTA Graphics 

LOCUS       XM_006239342            3635 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus PRAME family member 27 (Pramef27),
            transcript variant X1, mRNA.
ACCESSION   XM_006239342
VERSION     XM_006239342.5
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_006239342.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3635
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /note="PRAME family member 27; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 15 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:691051"
                     /db_xref="RGD:1588644"
     CDS             176..1552
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /codon_start=1
                     /product="PRAME family member 27 isoform X1"
                     /protein_id="XP_006239404.1"
                     /db_xref="GeneID:691051"
                     /db_xref="RGD:1588644"
                     /translation="MSCKTPPVLQELAEDSLLKNQALAVAALDDLPSLFFPSLFKKAC
                     RHRLVGIIKAMVQAWPFPCLPLGAMVSRKTAYRRILEIVLYGFDALLFQEVPHRRCKL
                     KVLDLRVMPLKLWNRLPVFGTAGCSENPAVLGHSGTRVKQPVKVLVDMVLKESPLDST
                     EAFLVQWVDSRSGLVKLCCCKLQIWAMSIYYHRKLLEILDLDSIQELRVYCISNPVCL
                     LNFAPYLGRMRNLRCLILSHLWQAFSMTPVEKQQVITQFTSQFLKLKCLQILHLDTVF
                     FLEGHLDELFWWLKTPLETLSVIDCNLSKSDWIHISEFQCTSQLKHLNLKWVKLTHLS
                     PEPLRILLLKSASTLISLDLEGCQMMDSQLSAILPALRCCTQLTKFNFHGNYISMPIL
                     RELAHNVVKQKSHPSKIHFIPSCDHHSGLDFEVISQPHIVFVDVERTTGQQEQVLFYA
                     VCSGEYVL"
     polyA_site      3635
                     /gene="Pramef27"
                     /gene_synonym="Pramel1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ccgaacgttg tgtaaaagct tccgagacca cgagagcgct gcggcttcct gttaagtctt
       61 tgggagtttg aggccagccg gggagacaga ggaaccgcag ggccctgctg cggctcagag
      121 acctctttcg tccgtccatc tctggaatcc tcttcccgaa gattgatccg tcaggatgag
      181 ctgcaagacc ccacctgtac tccaggagct ggcagaggac agcctcctga aaaaccaggc
      241 cttggctgtc gccgctctgg atgacctgcc ctcacttttc ttcccgtcgc tgttcaaaaa
      301 ggcctgcaga cacagactgg ttgggatcat caaggcgatg gtgcaggctt ggcccttccc
      361 ctgccttcca ctgggggcca tggtcagtag gaagactgcc taccggagaa tcttagagat
      421 tgtcctgtat ggcttcgatg ctttgctttt ccaggaagtt ccccacagga ggtgcaagct
      481 gaaagtgctg gatttacggg tcatgccttt gaagctgtgg aacaggttgc ccgtgttcgg
      541 gactgctggc tgtagtgaga atccagcagt gctgggccat tcaggaacac gggtgaaaca
      601 gccagtgaag gtgctggtag acatggtcct caaggagagc ccgctagatt ccacggaggc
      661 cttcctcgtt caatgggtag acagcaggag tggtttggtg aagctgtgct gttgcaagct
      721 gcagatctgg gcaatgtcca tttactacca tcggaaactc ttggagatct tggatctgga
      781 ctctatccag gagctgcgtg tatactgcat cagcaatccc gtctgcctgc taaacttcgc
      841 cccttacctg ggccgcatga ggaacctgcg ctgtctcatt ctctctcacc tctggcaggc
      901 cttctccatg actccagtgg agaagcagca ggtcatcacc cagttcacct ctcagttcct
      961 taaactgaaa tgcctccaga tcctgcatct ggacactgtc ttcttcctag agggccatct
     1021 ggatgagcta ttctggtggc taaagacacc cttagagacc ctgtcagtga ttgattgtaa
     1081 tctctcaaaa tcagactgga tccatatatc cgagttccag tgcacaagtc agctaaaaca
     1141 cctgaatttg aaatgggtca aactcaccca tttgagccca gagcccctga gaattctgtt
     1201 actgaaatct gcatctaccc tgatttccct ggatttggag ggctgtcaaa tgatggactc
     1261 ccagctcagt gccatcctac ctgccctgag atgctgtaca cagctcacca agtttaattt
     1321 ccacgggaac tacatctcca tgcctatcct gagggaactg gcacataacg tcgtcaagca
     1381 gaaatcccac ccgtcaaaga tccactttat cccaagctgt gatcatcaca gtggtctgga
     1441 cttcgaagtc atttctcagc ctcatattgt gtttgtagat gtggagagga ctactgggca
     1501 gcaagaacag gtcttgtttt atgctgtctg ctctggagaa tatgtgttgt gatgtccctc
     1561 tgatgggttg ggacttgttg ggcatctcta atgagatgca gattgatgct ctcctgtgga
     1621 cactgggagg tggagggcaa tacacaggtg ccatctggtc agagtatgtc caacacatgg
     1681 ttttacactg ttgttcttct gagtggtagg gaaattgatg ctagagtgca aaaaagtgag
     1741 agtgtttgac atagggagtg tgagacatcg acagacatca tgggttctgg ttgggcaggt
     1801 gcaaaagggc attcctccag cctggtggtt ttcggatttt atggtggaaa acgggactgg
     1861 cccacttgga tgatttgagt cctgtgactg ctggaaacaa acttgaactc ctggttcttc
     1921 tgctcttggc ttctgcgtgc tgagcttaga ctcaaaaccc catacctggt tccttacagc
     1981 tcctttaaca tcgtggctgt gcataggttt tctagtccaa cactaacatt gagtagcagt
     2041 ttttgtggga ctagagagat ggacttagca gttgagaaca cttgatgctt tttgtagaga
     2101 acctgggttt gattgattcc ccagatccac atggtggctc agccaaccag aactactcac
     2161 agggcacacg aggcatgagt gtggtgcatt agtcttgcgt atacgtgaaa cactcaggca
     2221 tgtacatctg aaataattta aatactggtt tgtattgctg acaccgaatg tcttgggtca
     2281 gccagcaccc agcattactg tgacagacac tgttaagtca tatatttata ctcataaaat
     2341 gccacttatg agcttaggaa attgaaccag gaatgtgtgg acaagtggac aaactctagc
     2401 agaaaaaaaa gaaaccaagc ttttatgaca atattagaca ccctagacca ctgttggatg
     2461 cagttcccat cctgattcat ctaaagaggg acatcaggta ctggggccat gataatgtgt
     2521 gttctcaggc tgggttgata caagctctga ctctgtccct aggctgcaac atgacatccc
     2581 ccactgctgg gcctctttaa ttgttttgtg gttagtgtgt tgtctctcca aatgaggctg
     2641 tggttaaacc tcaggtggtg tgtatcatgc tcactccttc ccttgacaag actttcatgg
     2701 aaccagaagc ttgatggttc acctagacct agacctgtta gccagagggc tcccatgggt
     2761 ctgccggtct ctgctggagc tgcaggctca tgcctctgtg actgaccttt cttatttctt
     2821 ttttcttttc tttctttttt cttctttttg agacagggtc tccatacaga cctgttagag
     2881 aactcattag accagacggg cctcagtcaa aaattccacc ttgattacag ttgtacgccc
     2941 tgtgccgggc tagtgtccct gtttaattta gtgggtggaa ttggccttac atgttgaccc
     3001 atccctacct cctgattgtt aggattatga gtgtaaatgc cacacgtggt tttatgcttt
     3061 ttctggggat tggaccgaaa gcttttcatt atacagcatc tgttcacatg tccagtggtg
     3121 cctgtgtggg ggtcaggaca atttgtatga gttggaactc ctaccatgtg gggcttggga
     3181 gttgaattga catgacagcc atctctgtgg tctgaaccta tagcgtcttg cttgcaaacg
     3241 ttctgcaccc tgagctacat ccacagcctg tccctttaat ccccccccca ctcccaccca
     3301 ggaatttgtt gtgtaaccag gccagtctca actcacggag atccatggcc tgcctctgct
     3361 tcccagtgct gggatgaaag gcccgcccat ctaagcctgg catcgccaat tctttcttct
     3421 tgtcctggtt ggtttttgtt tttgtttttt gttttttgtt tttttttttg cctccatatc
     3481 atttcctgta gtgcaatgca tggttaagat tggaaagaaa gcttgaattg ttagtggctg
     3541 tgattcgcaa gtgaaattac agtatttagt ggattataca catcaaagtt ggtgtagcct
     3601 gttgatttgt tcaataaatt ctgatgttat ctaaa
//
176..1552
/gene="Pramef27"
/gene_synonym="Pramel1"
/codon_start=1
/product="PRAME family member 27 isoform X1"
/protein_id="XP_006239404.1"
/db_xref="GeneID:691051"
/db_xref="RGD:1588644"
/translation="MSCKTPPVLQELAEDSLLKNQALAVAALDDLPSLFFPSLFKKAC
RHRLVGIIKAMVQAWPFPCLPLGAMVSRKTAYRRILEIVLYGFDALLFQEVPHRRCKL
KVLDLRVMPLKLWNRLPVFGTAGCSENPAVLGHSGTRVKQPVKVLVDMVLKESPLDST
EAFLVQWVDSRSGLVKLCCCKLQIWAMSIYYHRKLLEILDLDSIQELRVYCISNPVCL
LNFAPYLGRMRNLRCLILSHLWQAFSMTPVEKQQVITQFTSQFLKLKCLQILHLDTVF
FLEGHLDELFWWLKTPLETLSVIDCNLSKSDWIHISEFQCTSQLKHLNLKWVKLTHLS
PEPLRILLLKSASTLISLDLEGCQMMDSQLSAILPALRCCTQLTKFNFHGNYISMPIL
RELAHNVVKQKSHPSKIHFIPSCDHHSGLDFEVISQPHIVFVDVERTTGQQEQVLFYA
VCSGEYVL"
Feature XM_006239342 : 1 segment
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