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PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S35 (Mrps35), transcript variant X7, mRNA

NCBI Reference Sequence: XM_039107483.2

FASTA Graphics 

LOCUS       XM_039107483             781 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial ribosomal protein S35
            (Mrps35), transcript variant X7, mRNA.
ACCESSION   XM_039107483
VERSION     XM_039107483.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039107483.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..781
                     /gene="Mrps35"
                     /note="mitochondrial ribosomal protein S35; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 11 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:297727"
                     /db_xref="RGD:1306720"
     CDS             48..587
                     /gene="Mrps35"
                     /codon_start=1
                     /product="small ribosomal subunit protein mS35 isoform X7"
                     /protein_id="XP_038963411.1"
                     /db_xref="GeneID:297727"
                     /db_xref="RGD:1306720"
                     /translation="MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPRTVSRGERP
                     MRRKALPPRTEKMETDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVEL
                     LKIPNFLHLTPVAIKRHCGALKDFCTEWPAALDSDEKCEKHFPVEIDTADYVSSGPSI
                     RNPRARAVTLRMPFEAAEL"
     polyA_site      781
                     /gene="Mrps35"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gccccgcccc ctcagcgctt gtccgttctg gctcgccgtc cttcagcatg gctgccgctt
       61 cgctgcagct aaggctgacc ctatacccgg gagcgcgcgg cctgcgcacc ttctcctcag
      121 tcgccaggcc cgcggctcca agagccggcc cgcgtacagt atccagaggt gaaaggccga
      181 tgagaagaaa ggcactgcct cctaggacgg agaagatgga gactgaccag gactggccca
      241 gcgtttaccc tactgctgca ccgtttaaac cctcggctgt tcctctacct gttcgaatgg
      301 gatatccagt gaagaagggt gtgcccatgg cgaaggaggg gaatgtagag cttctaaaga
      361 tcccaaattt tctgcatttg actcctgtgg caattaaaag gcactgcgga gctctaaaag
      421 atttctgcac tgagtggcca gctgcactcg acagtgatga gaaatgtgag aagcattttc
      481 cagtcgagat tgacacagcg gattatgtgt catcaggacc gtccattcga aaccccagag
      541 cgcgagcggt aactttaagg atgccctttg aagcggcaga actatgacta tgcaatgtat
      601 ctccttacag tcctgtacca tgaatcttgg aaaactgaag aatgggaaaa aaataagact
      661 gaggaagaca tggatgagta tgtgtgggcg aagagctcct cggagaacag cgtcctccag
      721 accctgctgc agatgagagc tgccgagagc agtgtggcgc cgagcagaga agagctgctg
      781 g
//
48..587
/gene="Mrps35"
/codon_start=1
/product="small ribosomal subunit protein mS35 isoform X7"
/protein_id="XP_038963411.1"
/db_xref="GeneID:297727"
/db_xref="RGD:1306720"
/translation="MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPRTVSRGERP
MRRKALPPRTEKMETDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVEL
LKIPNFLHLTPVAIKRHCGALKDFCTEWPAALDSDEKCEKHFPVEIDTADYVSSGPSI
RNPRARAVTLRMPFEAAEL"
Feature XM_039107483 : 1 segment
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