U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Zfp1007l1 zinc finger protein 1007 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102556463, updated on 4-Jan-2025

    Summary

    Official Symbol
    Zfp1007l1provided by RGD
    Official Full Name
    zinc finger protein 1007 like 1provided by RGD
    Primary source
    RGD:7607957
    See related
    EnsemblRapid:ENSRNOG00000063563 AllianceGenome:RGD:7607957
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp1007l
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Lung (RPKM 137.6), Kidney (RPKM 98.7) and 9 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zfp1007l1 in Genome Data Viewer
    Location:
    9q38
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (121631445..121648621)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (114045241..114073158)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (533069..547564, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 844-like Neighboring gene zinc finger protein 950 like 17 Neighboring gene uncharacterized LOC120094820 Neighboring gene zinc finger protein 120 like 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger protein 431-like; zinc finger protein 709-like
    Names
    zinc finger protein 99-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      121631445..121648621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084934.2XP_038940862.1  zinc finger protein 431-like isoform X4

      Conserved Domains (1) summary
      pfam01352
      Location:2263
      KRAB; KRAB box
    2. XM_039084935.2XP_038940863.1  zinc finger protein 431-like isoform X5

      Conserved Domains (1) summary
      pfam01352
      Location:2263
      KRAB; KRAB box
    3. XM_039084929.2XP_038940857.1  zinc finger protein 431-like isoform X1

      UniProtKB/TrEMBL
      A0A8I6A7R4
      Conserved Domains (3) summary
      COG5048
      Location:232618
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:208228
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:2263
      KRAB; KRAB box
    4. XM_039084930.2XP_038940858.1  zinc finger protein 431-like isoform X2

      Related
      ENSRNOP00000097447.2, ENSRNOT00000117684.2
      Conserved Domains (3) summary
      COG5048
      Location:213599
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:189209
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:344
      KRAB; KRAB box
    5. XM_039084932.2XP_038940860.1  zinc finger protein 709-like isoform X3

      Related
      ENSRNOP00000086165.2, ENSRNOT00000109367.2
      Conserved Domains (2) summary
      COG5048
      Location:181567
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:157177
      ZF_C2H2; C2H2 Zn finger [structural motif]
    6. XM_063267940.1XP_063124010.1  zinc finger protein 709-like isoform X3