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    Gm14393 predicted gene 14393 [ Mus musculus (house mouse) ]

    Gene ID: 664987, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm14393provided by MGI
    Official Full Name
    predicted gene 14393provided by MGI
    Primary source
    MGI:MGI:3649576
    See related
    Ensembl:ENSMUSG00000078905 AllianceGenome:MGI:3649576
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 1.5), bladder adult (RPKM 1.5) and 25 other tissues See more
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    Genomic context

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    See Gm14393 in Genome Data Viewer
    Location:
    2 H4; 2 98.24 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (174899747..174983718, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (175057954..175150705, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 40017 Neighboring gene predicted gene, 52571 Neighboring gene STARR-seq mESC enhancer starr_06651 Neighboring gene STARR-seq mESC enhancer starr_06652 Neighboring gene STARR-seq mESC enhancer starr_06654 Neighboring gene STARR-seq mESC enhancer starr_06655 Neighboring gene predicted gene 14444 Neighboring gene STARR-seq mESC enhancer starr_06656 Neighboring gene predicted gene 14387 Neighboring gene STARR-seq mESC enhancer starr_06657 Neighboring gene predicted gene 14439 Neighboring gene STARR-seq mESC enhancer starr_06658 Neighboring gene predicted gene 14399 Neighboring gene STARR-seq mESC enhancer starr_06659 Neighboring gene STARR-positive B cell enhancer mm9_chr2:175032331-175032631 Neighboring gene predicted gene 14391 Neighboring gene predicted gene 14438

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    novel KRAB box and zinc finger, C2H2 type domain containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085546.2 → NP_001079015.1  novel KRAB box and zinc finger, C2H2 type domain containing protein

      Status: VALIDATED

      Source sequence(s)
      AL845494, CF161713, CF164689
      Consensus CDS
      CCDS50818.1
      UniProtKB/TrEMBL
      A2ARW5
      Related
      ENSMUSP00000072668.4, ENSMUST00000072895.10
      Conserved Domains (3) summary
      COG5048
      Location:86 → 162
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:105 → 125
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:3 → 44
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      174899747..174983718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251944.2 → XP_030107804.1  novel KRAB box and zinc finger, C2H2 type domain containing protein isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:54 → 130
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:73 → 93
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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