4GD3


Conserved Protein Domain Family
Ni_hydr_CYTB

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pfam01292: Ni_hydr_CYTB (484806 is an unknown moldel)
Prokaryotic cytochrome b561
This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.
Statistics
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PSSM-Id: 484806
Aligned: 79 rows
Threshold Bit Score: 35.1948
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GD3_B        13 VFEAPVRIWHWLTVLCMAVLMV---TGYFIGKPLPSVSGEATYlf------------------------yMGYirliHFS 65  Escherichia col...
Q3SMF3        22 VYDPLLRVLHWSIALGIVVLIA---TSQLAEAFEDGPWEDAI----------------------------WNV----HIL 66  Thiobacillus de...
WP_014960132  17 VWEIRLRLWHW-TNLLVVLLLF---ESYLLFNWHKELGLTHPTtv-----------------------ffQKI----HIY 65  Leptospirillum ...
Q6MN52         9 YQPLSLRLWHWFNALVILGLLG---TAFLRKTFLSWRTNAALIeskmleagtsitpelakdiavgirtpmWDW----HYV 81  Bdellovibrio ba...
WP_012155955  17 VWDKPVRIFHWVNVILITGLMF---IGLIMLFKAELGISGLAAki-----------------------klKEV----HIV 66  Shewanella peal...
WP_012148143   6 IWSLPTRVFHSLFAVFILLAFLtddDKL------------------------------------------LNY----HAV 39  Aliarcobacter b...
WP_011800935  30 VVDATTRMLHWLMALSF--------TGAYLTADGERWRLV-------------------------------------HVT 64  Polaromonas nap...
Q5P430         8 VWDRPVRIFHWGLVASLTAAYL---TSEDAESP--------------------------------------------HQW 40  Aromatoleum aro...
Q5QZM1        10 VWDSFIRVFHGLLIVLLGGLWWtveNGR------------------------------------------MEL----HKD 43  Idiomarina loih...
Q47YK1         6 AYPTYAKLIHLGIAFFGVFAFL---TGEFAEDGITSNG--------------------------------YLL----HSY 46  Colwellia psych...
4GD3_B        66 AGMVFTVVLLMRIYWAfvgnrysrelfivpvwr---kswwqgvwyeirwylfLAKRPSADIGHNPIAQA-----AMFGYF 137 Escherichia col...
Q3SMF3        67 SGYVLSAALAARLLWAlvgpanarwrdl------------whprvwkdallrLRLPHTHRVGHDALASL-----GYLFAY 129 Thiobacillus de...
WP_014960132  66 LGYAFILLFLGRLHLLfrgapvsrfreivpefkgrglfrtlreeihhhlsppRDAEGKLLPPADPGHNQlarflYLPLLT 145 Leptospirillum ...
Q6MN52        82 LGFTLGGLLIVRLLVGifavkkcpaah--------------aaqsawnlskvPAGQKTHALHYTLVKTG------YALFY 141 Bdellovibrio ba...
WP_012155955  67 IGYLFVINLFVRLLWGfigsgfarlshil----------psisaardysqalKSGGNPQYLGHNPLGKL-----AVSAIF 131 Shewanella peal...
WP_012148143  40 AGYAILILLAFRLFWGffgpkyskfkdfp-----------rgkknikeflnnIFEENQKYIGHNPLASY-----VMIAML 103 Aliarcobacter b...
WP_011800935  65 LGYTLAGLLVARVLWGllgprqarlamlwrkl----qglpgwlkslpnvksiATAQPAWRQGQNLMMAL-----AIVLIL 135 Polaromonas nap...
Q5P430        41 AGYLALALVAFRVVWGfvgspharfadfv----------prpatlvdyvgqlARGREPRHLGHNPAAAV-----MIVFLM 105 Aromatoleum aro...
Q5QZM1        44 IGIALLALLLVRVCWGifgsenarfktfl----------kspkailkhlhnvFKGRYEAENTHSTAGGW-----AVIIML 108 Idiomarina loih...
Q47YK1        47 LGLSLASIMLIRVAMGftksqalsfkawspf------skqqrqyaiedfrslLTLKIPKRGPHDGLAGF-----TQAFGL 115 Colwellia psych...
4GD3_B       138 LMSVFMIITGFALYSehsqyaifapfrYVVEFFYW-----------------------TGGNSMDIHSWH-RLGMWLIgA 193 Escherichia col...
Q3SMF3       130 AVMALMVVTGLALAAs-----------EFHTGPLAawl------------------gnSGWIEDVVEGPH-EFGFALLlG 179 Thiobacillus de...
WP_014960132 146 VVIPVQIVSGILWSS------------VKWGFWPLpflkt-------------lpdplHHTINETLSNIHaACMYLLL-G 199 Leptospirillum ...
Q6MN52       142 LVTVFMVVSGLVMYFknd-------------------------------------lglAKETIEPVKEIHeLMMWFFV-A 183 Bdellovibrio ba...
WP_012155955 132 VLLIVIAATGLFRAGtdvfy--ppfgsTITSYIAAdgveavtlkpyddtgvnqekvaqLKPYKSLAGKVH-IYGSYLLmL 208 Shewanella peal...
WP_012148143 104 IVTFLVIVTGILAF-------------GIQEGKGIlafl----------------ndsYFKNMKLFKEIHeILANLLI-A 153 Aliarcobacter b...
WP_011800935 136 GVVVPLTLSGYAVW--------------------------------------------DEWGGEWLEEVHeFFGNAML-A 170 Polaromonas nap...
Q5P430       106 AMVATIGTTGWLMTTd------------------------------------------WGWGSEILEEVH-VTAVDLTlG 142 Aromatoleum aro...
Q5QZM1       109 GLLLSQVITGLFSTDg-----------ILFSGPLSnw--------------------lSSDGQKAVTSWHkTQFDVIL-I 156 Idiomarina loih...
Q47YK1       116 LIFIWMSVTGTILFIlgs--------------------------------------esKSNIFEYVEELH-EVGESLIpI 156 Colwellia psych...
4GD3_B       194 FVIGHVYMALREDIMSDDt-VISTMVNG 220 Escherichia coli K-12
Q3SMF3       180 FIGLHLAALVFHQLRGER--VAQSMVTG 205 Thiobacillus denitrificans ATCC 25259
WP_014960132 200 FIGGHLFGIVLHEVTFRSd-ILSSMIHG 226 Leptospirillum ferriphilum
Q6MN52       184 FVSGHILGVVIAENRQDKg-LVSDMIHG 210 Bdellovibrio bacteriovorus
WP_012155955 209 LILIHILGVVIAELKHQPg-IVSAMFSG 235 Shewanella pealeana
WP_012148143 154 LIVAHISGVMLDRFLHKKhqTLNSIVTG 181 Aliarcobacter butzleri
WP_011800935 171 VVLAHVGLIALLSLLRRKn-QALPMLTG 197 Polaromonas naphthalenivorans
Q5P430       143 AIALHVAAAIFESVRHREn-LILSMLTG 169 Aromatoleum aromaticum EbN1
Q5QZM1       157 VIAVHILAVLFYRFKGTP--LVASMVHG 182 Idiomarina loihiensis
Q47YK1       157 FLALHVGAVILHSLCGKS--NWRKMFNN 182 Colwellia psychrerythraea 34H
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