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Conserved domains on  [gi|6730128|pdb|1C3O|C]
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Chain C, CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT

Protein Classification

carbamoyl phosphate synthase large subunit( domain architecture ID 11480555)

carbamoyl phosphate synthase large subunit is a component of the two-subunit enzyme that catalyzes the reaction of bicarbonate, glutamine, and two molecules of MgATP, to produce carbamoyl phosphate, an intermediate in the biosynthesis of arginine and pyrimidine nucleotides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
carB PRK05294
carbamoyl-phosphate synthase large subunit;
1-1069 0e+00

carbamoyl-phosphate synthase large subunit;


:

Pssm-ID: 235393 [Multi-domain]  Cd Length: 1066  Bit Score: 2213.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80
Cdd:PRK05294    1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         81 ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA 160
Cdd:PRK05294   81 ERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Cdd:PRK05294  161 EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA 320
Cdd:PRK05294  241 GVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        321 KVAAKLAVGYTLDELMNDITGgRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR 400
Cdd:PRK05294  321 KVAAKLAVGYTLDEIKNDITG-KTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        401 GLEVGATGFDPKvsLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEvG 480
Cdd:PRK05294  400 SLEIGVTGLDED--LFEEESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKE-N 476
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPStDRE 560
Cdd:PRK05294  477 GLPLDAELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPS-DRK 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        561 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV 640
Cdd:PRK05294  556 KVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIV 635
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        641 QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
Cdd:PRK05294  636 QFGGQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPSYVL 715
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT 800
Cdd:PRK05294  716 GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQT 795
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT 880
Cdd:PRK05294  796 LSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAELGYT 875
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        881 KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
Cdd:PRK05294  876 KGLIPPYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNRLPTSGTVFLSVRDRDKEEVVEL 955
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY 1040
Cdd:PRK05294  956 AKRLLELGFKILATSGTAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPY 1035
                        1050      1060      1070
                  ....*....|....*....|....*....|.
1C3O_C       1041 DTTLNGGFATAMALNADATEK--VISVQEMH 1069
Cdd:PRK05294 1036 ITTLAGARAAVKAIEALKFGEleVRSLQEYH 1066
 
Name Accession Description Interval E-value
carB PRK05294
carbamoyl-phosphate synthase large subunit;
1-1069 0e+00

carbamoyl-phosphate synthase large subunit;


Pssm-ID: 235393 [Multi-domain]  Cd Length: 1066  Bit Score: 2213.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80
Cdd:PRK05294    1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         81 ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA 160
Cdd:PRK05294   81 ERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Cdd:PRK05294  161 EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA 320
Cdd:PRK05294  241 GVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        321 KVAAKLAVGYTLDELMNDITGgRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR 400
Cdd:PRK05294  321 KVAAKLAVGYTLDEIKNDITG-KTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        401 GLEVGATGFDPKvsLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEvG 480
Cdd:PRK05294  400 SLEIGVTGLDED--LFEEESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKE-N 476
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPStDRE 560
Cdd:PRK05294  477 GLPLDAELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPS-DRK 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        561 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV 640
Cdd:PRK05294  556 KVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIV 635
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        641 QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
Cdd:PRK05294  636 QFGGQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPSYVL 715
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT 800
Cdd:PRK05294  716 GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQT 795
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT 880
Cdd:PRK05294  796 LSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAELGYT 875
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        881 KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
Cdd:PRK05294  876 KGLIPPYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNRLPTSGTVFLSVRDRDKEEVVEL 955
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY 1040
Cdd:PRK05294  956 AKRLLELGFKILATSGTAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPY 1035
                        1050      1060      1070
                  ....*....|....*....|....*....|.
1C3O_C       1041 DTTLNGGFATAMALNADATEK--VISVQEMH 1069
Cdd:PRK05294 1036 ITTLAGARAAVKAIEALKFGEleVRSLQEYH 1066
CPSaseII_lrg TIGR01369
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ...
2-1054 0e+00

carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273581 [Multi-domain]  Cd Length: 1050  Bit Score: 1827.31  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKE 81
Cdd:TIGR01369    1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAAD 161
Cdd:TIGR01369   81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         162 VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Cdd:TIGR01369  161 IGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMG 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAK 321
Cdd:TIGR01369  241 VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAK 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         322 VAAKLAVGYTLDELMNDITGgRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRG 401
Cdd:TIGR01369  320 VAAKLAVGYTLDELKNPVTG-TTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRS 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         402 LEVGATGFDpkVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Cdd:TIGR01369  399 LEIGATGFD--LPDREVEPDEDLWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKL 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREK 561
Cdd:TIGR01369  477 TDLDPELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKK 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         562 IMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQ 641
Cdd:TIGR01369  557 VLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQ 636
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         642 YGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLG 721
Cdd:TIGR01369  637 FGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPSYVLG 716
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         722 GRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTL 801
Cdd:TIGR01369  717 GRAMEIVYNEEELRRYLEEAVAVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTL 796
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTK 881
Cdd:TIGR01369  797 SAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLAKLAVRVMLGKKLEELGVGK 876
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         882 EVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLA 961
Cdd:TIGR01369  877 EKEPKYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKAQLSSGNRIPKKGSVLLSVRDKDKEELLDLA 956
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         962 AKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS-GRRAIEDSRVIRRSALQYKVHY 1040
Cdd:TIGR01369  957 RKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSkGAGTATDGYKIRREALDYGVPL 1036
                         1050
                   ....*....|....
1C3O_C        1041 DTTLNGGFATAMAL 1054
Cdd:TIGR01369 1037 ITTLNTAEAFAEAL 1050
CarB COG0458
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ...
13-566 0e+00

Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440226 [Multi-domain]  Cd Length: 536  Bit Score: 770.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        13 LGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGG 92
Cdd:COG0458    1 IGSGPIRIGQGIEFDYSGVQACKALREEGYEVILVNSNPETVSTDYDTADRLYFEPLTVEDVLDIIEKEKPDGVIVQFGG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        93 QTALNCALELERQGVLEefGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSF 172
Cdd:COG0458   81 QTALNLAVELEEAGILE--GVKILGTSPDAIDLAEDRELFKELLDKLGIPQPKSGTATSVEEALAIAEEIGYPVIVRPSY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       173 TMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAP 252
Cdd:COG0458  159 VLGGRGMGIVYNEEELEEYLERALKVSPDHPVLIDESLLGAKEIEVDVVRDGEDNVIIVGIMEHIEPAGVHSGDSICVAP 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       253 AQTLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVnpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTL 332
Cdd:COG0458  239 PQTLSDKEYQRLRDATLKIARALGVV-GLCNIQFAV--DDGRVYVIEVNPRASRSSPFASKATGYPIAKIAAKLALGYTL 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       333 DELMNDiTGgrtpasFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATG--FD 410
Cdd:COG0458  316 DELGND-TG------FEPTLDYVVVKEPVFPFEKFPGVDPVLGPEMKSTGEVMGIGRTFEEALQKALRSLEIGLPGtvLL 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       411 PKVSLDDPEALTKIRRELkdagaDRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVgitGLNADFLR 490
Cdd:COG0458  389 SLVADDDKEEALLLARRL-----ARLGFLIEATRGTAEVLEEAGITVIDVFKLSEGRPIIVDEIELEEI---ILVINTLL 460
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1C3O_C       491 QLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG 566
Cdd:COG0458  461 GAKSLGDSDGIIRRALAAKVPYVTTLAAAAAAALAIKAVETEAGEFEEATAYYYSTYEYENESEETEEPKVVVIGS 536
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
128-333 2.06e-92

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 293.44  E-value: 2.06e-92
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         128 DRRRFDVAMKKIGLETARSGIA--HTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPT---- 201
Cdd:pfam02786    1 DKVLFKAAMKEAGVPTVPGTAGpvETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAafgn 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         202 KELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMgiHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGG 281
Cdd:pfam02786   81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR--RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAG 158
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
1C3O_C         282 sNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLD 333
Cdd:pfam02786  159 -TVEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP 209
CPSase_L_D3 smart01096
Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate ...
424-547 1.70e-62

Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain.


Pssm-ID: 198164 [Multi-domain]  Cd Length: 124  Bit Score: 207.69  E-value: 1.70e-62
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          424 IRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLA 503
Cdd:smart01096    1 LLEELRTPTDERLFYIAEALRRGYSVDEIHELTKIDPWFLEKIKEIVELEKELKKGGLDELDADLLRKAKRLGFSDRQIA 80
                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
1C3O_C          504 KLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTY 547
Cdd:smart01096   81 KLLGVTEAEVRALRKELGIRPVYKRVDTCAAEFPANTPYYYSTY 124
MGS_CPS_II cd01424
Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate ...
943-1052 3.13e-46

Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.


Pssm-ID: 238712 [Multi-domain]  Cd Length: 110  Bit Score: 161.11  E-value: 3.13e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       943 GRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRA 1022
Cdd:cd01424    1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA 80
                         90       100       110
                 ....*....|....*....|....*....|
1C3O_C      1023 IEDSRVIRRSALQYKVHYDTTLNGGFATAM 1052
Cdd:cd01424   81 IRDGFSIRRAALEYKVPYFTTLDTARAAVE 110
 
Name Accession Description Interval E-value
carB PRK05294
carbamoyl-phosphate synthase large subunit;
1-1069 0e+00

carbamoyl-phosphate synthase large subunit;


Pssm-ID: 235393 [Multi-domain]  Cd Length: 1066  Bit Score: 2213.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80
Cdd:PRK05294    1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         81 ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA 160
Cdd:PRK05294   81 ERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Cdd:PRK05294  161 EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA 320
Cdd:PRK05294  241 GVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        321 KVAAKLAVGYTLDELMNDITGgRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR 400
Cdd:PRK05294  321 KVAAKLAVGYTLDEIKNDITG-KTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALR 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        401 GLEVGATGFDPKvsLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEvG 480
Cdd:PRK05294  400 SLEIGVTGLDED--LFEEESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKE-N 476
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPStDRE 560
Cdd:PRK05294  477 GLPLDAELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPS-DRK 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        561 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV 640
Cdd:PRK05294  556 KVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIV 635
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        641 QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
Cdd:PRK05294  636 QFGGQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPSYVL 715
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT 800
Cdd:PRK05294  716 GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQT 795
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT 880
Cdd:PRK05294  796 LSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAELGYT 875
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        881 KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
Cdd:PRK05294  876 KGLIPPYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNRLPTSGTVFLSVRDRDKEEVVEL 955
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY 1040
Cdd:PRK05294  956 AKRLLELGFKILATSGTAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPY 1035
                        1050      1060      1070
                  ....*....|....*....|....*....|.
1C3O_C       1041 DTTLNGGFATAMALNADATEK--VISVQEMH 1069
Cdd:PRK05294 1036 ITTLAGARAAVKAIEALKFGEleVRSLQEYH 1066
CPSaseII_lrg TIGR01369
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ...
2-1054 0e+00

carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273581 [Multi-domain]  Cd Length: 1050  Bit Score: 1827.31  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKE 81
Cdd:TIGR01369    1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAAD 161
Cdd:TIGR01369   81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         162 VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Cdd:TIGR01369  161 IGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMG 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAK 321
Cdd:TIGR01369  241 VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAK 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         322 VAAKLAVGYTLDELMNDITGgRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRG 401
Cdd:TIGR01369  320 VAAKLAVGYTLDELKNPVTG-TTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRS 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         402 LEVGATGFDpkVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Cdd:TIGR01369  399 LEIGATGFD--LPDREVEPDEDLWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKL 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREK 561
Cdd:TIGR01369  477 TDLDPELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKK 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         562 IMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQ 641
Cdd:TIGR01369  557 VLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQ 636
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         642 YGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLG 721
Cdd:TIGR01369  637 FGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPSYVLG 716
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         722 GRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTL 801
Cdd:TIGR01369  717 GRAMEIVYNEEELRRYLEEAVAVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTL 796
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTK 881
Cdd:TIGR01369  797 SAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLAKLAVRVMLGKKLEELGVGK 876
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         882 EVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLA 961
Cdd:TIGR01369  877 EKEPKYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKAQLSSGNRIPKKGSVLLSVRDKDKEELLDLA 956
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         962 AKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS-GRRAIEDSRVIRRSALQYKVHY 1040
Cdd:TIGR01369  957 RKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSkGAGTATDGYKIRREALDYGVPL 1036
                         1050
                   ....*....|....
1C3O_C        1041 DTTLNGGFATAMAL 1054
Cdd:TIGR01369 1037 ITTLNTAEAFAEAL 1050
PLN02735 PLN02735
carbamoyl-phosphate synthase
3-1056 0e+00

carbamoyl-phosphate synthase


Pssm-ID: 215391 [Multi-domain]  Cd Length: 1102  Bit Score: 1508.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKER 82
Cdd:PLN02735   19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKER 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         83 PDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADV 162
Cdd:PLN02735   99 PDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDI 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        163 G-FPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Cdd:PLN02735  179 GeFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAK 321
Cdd:PLN02735  259 VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAK 338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        322 VAAKLAVGYTLDELMNDITgGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRG 401
Cdd:PLN02735  339 MAAKLSVGYTLDQIPNDIT-LKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKALRS 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        402 LEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Cdd:PLN02735  418 LETGFSGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSL 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPsTDREK 561
Cdd:PLN02735  498 SELSKDDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAP-TNKKK 576
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        562 IMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQ 641
Cdd:PLN02735  577 VLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQ 656
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        642 YGGQTPLKLARALE----------AAG---VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI 708
Cdd:PLN02735  657 FGGQTPLKLALPIQkyldknpppsASGngnVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRI 736
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        709 GYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE-MVLIGGIMEHIEQAGV 787
Cdd:PLN02735  737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEgNVVIGGIMEHIEQAGV 816
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        788 HSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAA 866
Cdd:PLN02735  817 HSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAItPSGEVYIIEANPRASRTVPFVSKAIGHPLAKYAS 896
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        867 RVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRAL 946
Cdd:PLN02735  897 LVMSGKSLKDLGFTEEVIPAHVSVKEAVLPFDKFQGCDVLLGPEMRSTGEVMGIDYEFSKAFAKAQIAAGQRLPLSGTVF 976
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        947 LSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRA-IED 1025
Cdd:PLN02735  977 ISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALdQKD 1056
                        1050      1060      1070
                  ....*....|....*....|....*....|.
1C3O_C       1026 SRVIRRSALQYKVHYDTTLNGGFATAMALNA 1056
Cdd:PLN02735 1057 GRQLRRMALAYKVPIITTVAGALATAQAVKS 1087
carB PRK12815
carbamoyl phosphate synthase large subunit; Reviewed
1-1069 0e+00

carbamoyl phosphate synthase large subunit; Reviewed


Pssm-ID: 237215 [Multi-domain]  Cd Length: 1068  Bit Score: 1503.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80
Cdd:PRK12815    1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         81 ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA 160
Cdd:PRK12815   81 EKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        161 DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Cdd:PRK12815  161 KIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPV 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVeTGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA 320
Cdd:PRK12815  241 GIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGV-VGGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIA 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        321 KVAAKLAVGYTLDELMNDITgGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR 400
Cdd:PRK12815  320 KIAAKLAVGYTLNELKNPVT-GLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALR 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        401 GLEVGATGFDPKVSLdDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
Cdd:PRK12815  399 SLEIKRNGLSLPIEL-SGKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDG 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        481 ITgLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDRE 560
Cdd:PRK12815  478 LD-LSADLLRKVKEKGFSDALLAELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKK 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        561 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV 640
Cdd:PRK12815  557 KVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIV 636
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        641 QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
Cdd:PRK12815  637 QFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLIRPSYVI 716
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        721 GGRAMEIVYDEADLRRYFQTAvsVSNDAPVLLDHFLdDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT 800
Cdd:PRK12815  717 GGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQFI-DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVLPPQS 793
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT 880
Cdd:PRK12815  794 LSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYP 873
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        881 KEVIP--PYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVV 958
Cdd:PRK12815  874 NGLWPgsPFIHVKMPVFSYLKYPGVDNTLGPEMKSTGEVMGIDKDLEEALYKGYEASDLHIPSYGTIFISVRDEDKPEVT 953
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        959 DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKV 1038
Cdd:PRK12815  954 KLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIKIRDEALSTHI 1033
                        1050      1060      1070
                  ....*....|....*....|....*....|.
1C3O_C       1039 HYDTTLNGGFATAMALNADATEkVISVQEMH 1069
Cdd:PRK12815 1034 PVFTELETAQAFLQVLESLALT-TQPIQELQ 1063
CarB COG0458
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ...
13-566 0e+00

Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440226 [Multi-domain]  Cd Length: 536  Bit Score: 770.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        13 LGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGG 92
Cdd:COG0458    1 IGSGPIRIGQGIEFDYSGVQACKALREEGYEVILVNSNPETVSTDYDTADRLYFEPLTVEDVLDIIEKEKPDGVIVQFGG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        93 QTALNCALELERQGVLEefGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSF 172
Cdd:COG0458   81 QTALNLAVELEEAGILE--GVKILGTSPDAIDLAEDRELFKELLDKLGIPQPKSGTATSVEEALAIAEEIGYPVIVRPSY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       173 TMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAP 252
Cdd:COG0458  159 VLGGRGMGIVYNEEELEEYLERALKVSPDHPVLIDESLLGAKEIEVDVVRDGEDNVIIVGIMEHIEPAGVHSGDSICVAP 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       253 AQTLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVnpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTL 332
Cdd:COG0458  239 PQTLSDKEYQRLRDATLKIARALGVV-GLCNIQFAV--DDGRVYVIEVNPRASRSSPFASKATGYPIAKIAAKLALGYTL 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       333 DELMNDiTGgrtpasFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATG--FD 410
Cdd:COG0458  316 DELGND-TG------FEPTLDYVVVKEPVFPFEKFPGVDPVLGPEMKSTGEVMGIGRTFEEALQKALRSLEIGLPGtvLL 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       411 PKVSLDDPEALTKIRRELkdagaDRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVgitGLNADFLR 490
Cdd:COG0458  389 SLVADDDKEEALLLARRL-----ARLGFLIEATRGTAEVLEEAGITVIDVFKLSEGRPIIVDEIELEEI---ILVINTLL 460
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1C3O_C       491 QLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG 566
Cdd:COG0458  461 GAKSLGDSDGIIRRALAAKVPYVTTLAAAAAAALAIKAVETEAGEFEEATAYYYSTYEYENESEETEEPKVVVIGS 536
CarB COG0458
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ...
565-1067 0e+00

Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440226 [Multi-domain]  Cd Length: 536  Bit Score: 765.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       565 LGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGG 644
Cdd:COG0458    1 IGSGPIRIGQGIEFDYSGVQACKALREEGYEVILVNSNPETVSTDYDTADRLYFEPLTVEDVLDIIEKEKPDGVIVQFGG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       645 QTPLKLARALEAA----GVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
Cdd:COG0458   81 QTALNLAVELEEAgileGVKILGTSPDAIDLAEDRELFKELLDKLGIPQPKSGTATSVEEALAIAEEIGYPVIVRPSYVL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEM-VLIGGIMEHIEQAGVHSGDSACSLPAY 799
Cdd:COG0458  161 GGRGMGIVYNEEELEEYLERALKVSPDHPVLIDESLLGAKEIEVDVVRDGEDnVIIVGIMEHIEPAGVHSGDSICVAPPQ 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       800 TLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGV 879
Cdd:COG0458  241 TLSDKEYQRLRDATLKIARALGVVGLCNIQFAVDDGRVYVIEVNPRASRSSPFASKATGYPIAKIAAKLALGYTLDELGN 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       880 TKEVIP--PYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNstMKKHGRALLS-VREGDKER 956
Cdd:COG0458  321 DTGFEPtlDYVVVKEPVFPFEKFPGVDPVLGPEMKSTGEVMGIGRTFEEALQKALRSLE--IGLPGTVLLSlVADDDKEE 398
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       957 VVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQY 1036
Cdd:COG0458  399 ALLLARRLARLGFLIEATRGTAEVLEEAGITVIDVFKLSEGRPIIVDEIELEEIILVINTLLGAKSLGDSDGIIRRALAA 478
                        490       500       510
                 ....*....|....*....|....*....|.
1C3O_C      1037 KVHYDTTLNGGFATAMALNADATEKVISVQE 1067
Cdd:COG0458  479 KVPYVTTLAAAAAAALAIKAVETEAGEFEEA 509
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
128-333 2.06e-92

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 293.44  E-value: 2.06e-92
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         128 DRRRFDVAMKKIGLETARSGIA--HTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPT---- 201
Cdd:pfam02786    1 DKVLFKAAMKEAGVPTVPGTAGpvETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAafgn 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         202 KELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMgiHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGG 281
Cdd:pfam02786   81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR--RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAG 158
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
1C3O_C         282 sNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLD 333
Cdd:pfam02786  159 -TVEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP 209
PLN02735 PLN02735
carbamoyl-phosphate synthase
538-931 2.65e-78

carbamoyl-phosphate synthase


Pssm-ID: 215391 [Multi-domain]  Cd Length: 1102  Bit Score: 278.97  E-value: 2.65e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        538 TDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLY 617
Cdd:PLN02735    2 SLADTVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        618 FEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARA------LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA 691
Cdd:PLN02735   82 IAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVAlaesgiLEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPP 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        692 NATVTAIEMAVEKAKEIG-YPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD- 769
Cdd:PLN02735  162 SGIATTLDECFEIAEDIGeFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDl 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        770 GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVR-GLMNVQFAV--KNNEVYLIEVNPRA 846
Cdd:PLN02735  242 ADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVEcGGSNVQFAVnpVDGEVMIIEMNPRV 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        847 ARTVPFVSKATGVPLAKVAARVMAGKSLAE--QGVTKEViPPYY--SVKEVV-----LPFNKFPGVDPLLGPEMRSTGEV 917
Cdd:PLN02735  322 SRSSALASKATGFPIAKMAAKLSVGYTLDQipNDITLKT-PASFepSIDYVVtkiprFAFEKFPGSQPILTTQMKSVGEA 400
                         410
                  ....*....|....
1C3O_C        918 MGVGRTFAEAFAKA 931
Cdd:PLN02735  401 MALGRTFQESFQKA 414
CPSase_L_D3 smart01096
Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate ...
424-547 1.70e-62

Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain.


Pssm-ID: 198164 [Multi-domain]  Cd Length: 124  Bit Score: 207.69  E-value: 1.70e-62
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          424 IRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLA 503
Cdd:smart01096    1 LLEELRTPTDERLFYIAEALRRGYSVDEIHELTKIDPWFLEKIKEIVELEKELKKGGLDELDADLLRKAKRLGFSDRQIA 80
                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
1C3O_C          504 KLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTY 547
Cdd:smart01096   81 KLLGVTEAEVRALRKELGIRPVYKRVDTCAAEFPANTPYYYSTY 124
MGS_CPS_II cd01424
Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate ...
943-1052 3.13e-46

Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.


Pssm-ID: 238712 [Multi-domain]  Cd Length: 110  Bit Score: 161.11  E-value: 3.13e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       943 GRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRA 1022
Cdd:cd01424    1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA 80
                         90       100       110
                 ....*....|....*....|....*....|
1C3O_C      1023 IEDSRVIRRSALQYKVHYDTTLNGGFATAM 1052
Cdd:cd01424   81 IRDGFSIRRAALEYKVPYFTTLDTARAAVE 110
MGS-like cd00532
MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which ...
944-1050 2.24e-36

MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.


Pssm-ID: 238297 [Multi-domain]  Cd Length: 112  Bit Score: 133.02  E-value: 2.24e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       944 RALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHE-GRPHIQDRIKN-GEYTYIINTTSGRR 1021
Cdd:cd00532    1 GVFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEdGEPTVDAAIAEkGKFDVVINLRDPRR 80
                         90       100       110
                 ....*....|....*....|....*....|..
1C3O_C      1022 A---IEDSRVIRRSALQYKVHYDTTLNGGFAT 1050
Cdd:cd00532   81 DrctDEDGTALLRLARLYKIPVTTPNATAMFV 112
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
674-874 3.17e-36

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 136.28  E-value: 3.17e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         674 DRERFQHAVERLKLKQP--ANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAP-- 749
Cdd:pfam02786    1 DKVLFKAAMKEAGVPTVpgTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFgn 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         750 --VLLDHFLDDAVEVDVDAICDGE-MVLIGGIMEHIEQagVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLM 826
Cdd:pfam02786   81 pqVLVEKSLKGPKHIEYQVLRDAHgNCITVCNRECSDQ--RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAG 158
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
1C3O_C         827 NVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSL 874
Cdd:pfam02786  159 TVEFALdpFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPL 208
CPSase_L_D3 pfam02787
Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate ...
426-505 4.62e-31

Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain.


Pssm-ID: 460695  Cd Length: 79  Bit Score: 116.71  E-value: 4.62e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         426 RELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITgLNADFLRQLKRKGFADARLAKL 505
Cdd:pfam02787    1 EELRTPTDERLFAIAEALRRGYSVEEIHELTKIDPWFLDKIKNIVELEKELKEAGLD-LDAELLREAKRLGFSDRQIAKL 79
AccC COG0439
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ...
72-329 9.41e-27

Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440208 [Multi-domain]  Cd Length: 263  Bit Score: 110.73  E-value: 9.41e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        72 EVVRKIIEKERPDAVLPTmggqtalnCALELERQGVL-EEFGVTmiGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH 150
Cdd:COG0439    7 AAAAELARETGIDAVLSE--------SEFAVETAAELaEELGLP--GPSPEAIRAMRDKVLMREALAAAGVPVPGFALVD 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       151 TMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREE----FEEICARGLDLSPTKELLIDESLIGwKEYEME-VVRDKN 225
Cdd:COG0439   77 SPEEALAFAEEIGYPVVVKPADGAGSRGVRVVRDEEEleaaLAEARAEAKAGSPNGEVLVEEFLEG-REYSVEgLVRDGE 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       226 dncIIVCSI---ENFDAMGIHTGDsitVAPAQtLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPkNGRLIVIEMNP 302
Cdd:COG0439  156 ---VVVCSItrkHQKPPYFVELGH---EAPSP-LPEELRAEIGELVARALRALGYRRGAFHTEFLLTP-DGEPYLIEINA 227
                        250       260
                 ....*....|....*....|....*....
1C3O_C       303 RVS--RSSALASKATGFPIAKVAAKLAVG 329
Cdd:COG0439  228 RLGgeHIPPLTELATGVDLVREQIRLALG 256
AccC COG0439
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ...
651-872 1.32e-24

Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440208 [Multi-domain]  Cd Length: 263  Bit Score: 104.57  E-value: 1.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       651 ARALEAAGVPviGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYD 730
Cdd:COG0439   33 AELAEELGLP--GPSPEAIRAMRDKVLMREALAAAGVPVPGFALVDSPEEALAFAEEIGYPVVVKPADGAGSRGVRVVRD 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       731 EADLRRYFQTAVS----VSNDAPVLLDHFLdDAVEVDVDAICDGEMVLIGGIMEHIeQAGVHSGDSACSLPAyTLSQEIQ 806
Cdd:COG0439  111 EEELEAALAEARAeakaGSPNGEVLVEEFL-EGREYSVEGLVRDGEVVVCSITRKH-QKPPYFVELGHEAPS-PLPEELR 187
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       807 DVMRQQVQKLAFELQV-RGLMNVQFAV-KNNEVYLIEVNPRA--ARTVPFVSKATGVPLAKVAARVMAGK 872
Cdd:COG0439  188 AEIGELVARALRALGYrRGAFHTEFLLtPDGEPYLIEINARLggEHIPPLTELATGVDLVREQIRLALGE 257
MGS smart00851
MGS-like domain; This domain composes the whole protein of methylglyoxal synthetase and the ...
956-1042 1.41e-24

MGS-like domain; This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.


Pssm-ID: 214855 [Multi-domain]  Cd Length: 91  Bit Score: 98.70  E-value: 1.41e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          956 RVVDLAAKLLKQGFELDATHGTAIVLGEAGINP--RLVNKVHEGRPHIQDRIKNGEYTYIINTTSG--RRAIEDSRVIRR 1031
Cdd:smart00851    1 GLVEFAKRLAELGFELLATGGTAKFLREAGLPVvkTLHPKVHGGIPQILDLIKNGEIDLVINTLYPfeAQAHEDGYSIRR 80
                            90
                    ....*....|.
1C3O_C         1032 SALQYKVHYDT 1042
Cdd:smart00851   81 AAENIDIPGPT 91
MGS pfam02142
MGS-like domain; This domain composes the whole protein of methylglyoxal synthetase and the ...
956-1042 8.88e-23

MGS-like domain; This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.


Pssm-ID: 460462 [Multi-domain]  Cd Length: 93  Bit Score: 93.71  E-value: 8.88e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         956 RVVDLAAKLLKQGFELDATHGTAIVLGEAGINPR-LVNKVHEGRPH----IQDRIKNGEYTYIINTTSGRRAIE-DSRVI 1029
Cdd:pfam02142    1 GLVELAKALVELGFELLATGGTAKFLREAGIPVTeVVEKTGEGRPGgrvqIGDLIKNGEIDLVINTLYPFKATVhDGYAI 80
                           90
                   ....*....|...
1C3O_C        1030 RRSALQYKVHYDT 1042
Cdd:pfam02142   81 RRAAENIDIPGPT 93
PRK12767 PRK12767
carbamoyl phosphate synthase-like protein; Provisional
623-852 5.88e-18

carbamoyl phosphate synthase-like protein; Provisional


Pssm-ID: 237195 [Multi-domain]  Cd Length: 326  Bit Score: 86.48  E-value: 5.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        623 LEDVLEIVRIEKPKGVIVqyGGQTPLK-LAR---ALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAI 698
Cdd:PRK12767   58 IDRLLDICKKEKIDLLIP--LIDPELPlLAQnrdRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        699 EMAVE--KAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAvsvsndAPVLLDHFLDDAvEVDVDAICDGEMVLIG 776
Cdd:PRK12767  136 EDFKAalAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEGQ-EYTVDVLCDLNGEVIS 208
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
1C3O_C        777 GI-MEHIEqagVHSGDSacsLPAYTlsqEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPF 852
Cdd:PRK12767  209 IVpRKRIE---VRAGET---SKGVT---VKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINPRFGGGYPL 276
PRK12767 PRK12767
carbamoyl phosphate synthase-like protein; Provisional
10-314 1.25e-16

carbamoyl phosphate synthase-like protein; Provisional


Pssm-ID: 237195 [Multi-domain]  Cd Length: 326  Bit Score: 82.24  E-value: 1.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         10 ILILGAGpivigqacefdySGAQACKALREE--GYRVILV---NSNPATIMTD-----PEMADATYIEPIHwevvrKIIE 79
Cdd:PRK12767    4 ILVTSAG------------RRVQLVKALKKSllKGRVIGAdisELAPALYFADkfyvvPKVTDPNYIDRLL-----DICK 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         80 KERPDAVLPTMGGQTALNCAlELERqgvLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAV- 158
Cdd:PRK12767   67 KEKIDLLIPLIDPELPLLAQ-NRDR---FEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAAl 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        159 -AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGldlsptKELLIDESLIGwKEYEMEVVRDKNDNCIIVCSIENF 237
Cdd:PRK12767  143 aKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRI 215
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
1C3O_C        238 DAMGIHTGDSITVapaqtltdkEYQIMRNASMAVLREIGvETGGSNVQFAVNpkNGRLIVIEMNPRVSRSSALASKA 314
Cdd:PRK12767  216 EVRAGETSKGVTV---------KDPELFKLAERLAEALG-ARGPLNIQCFVT--DGEPYLFEINPRFGGGYPLSYMA 280
COG3919 COG3919
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
555-884 2.91e-16

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];


Pssm-ID: 443124 [Multi-domain]  Cd Length: 382  Bit Score: 81.90  E-value: 2.91e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       555 PSTDREKIMVLGGGPNrigqgiefDYCCVHAslaLREDGYETIMVNCNPETVSTDYDTSDRLYFEP-------VTLEDVL 627
Cdd:COG3919    1 AMTMRFRVVVLGGDIN--------ALAVARS---LGEAGVRVIVVDRDPLGPAARSRYVDEVVVVPdpgddpeAFVDALL 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       628 EIVRiEKPKGVIVQYGGQTPLKLARALE--AAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKA 705
Cdd:COG3919   70 ELAE-RHGPDVLIPTGDEYVELLSRHRDelEEHYRLPYPDADLLDRLLDKERFYELAEELGVPVPKTVVLDSADDLDALA 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       706 KEIGYPLVVRPSY--------VLGGRAMEIVYDEADLRRYFQTAVSvsNDAPVLLDHFL--DDAVEVDVDAICD--GEMV 773
Cdd:COG3919  149 EDLGFPVVVKPADsvgydelsFPGKKKVFYVDDREELLALLRRIAA--AGYELIVQEYIpgDDGEMRGLTAYVDrdGEVV 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       774 LIGG---IMEHIEQAGVhsgdsacslPAYTLSQEIQDVMRQqVQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAAR 848
Cdd:COG3919  227 ATFTgrkLRHYPPAGGN---------SAARESVDDPELEEA-ARRLLEALGYHGFANVEFKRdpRDGEYKLIEINPRFWR 296
                        330       340       350
                 ....*....|....*....|....*....|....*.
1C3O_C       849 TVPFVSKAtGVPLAKVAARVMAGKSLAEQGVTKEVI 884
Cdd:COG3919  297 SLYLATAA-GVNFPYLLYDDAVGRPLEPVPAYREGV 331
COG3919 COG3919
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
9-329 4.41e-15

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];


Pssm-ID: 443124 [Multi-domain]  Cd Length: 382  Bit Score: 78.43  E-value: 4.41e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         9 SILILGAGPIVIGqacefdysgaqACKALREEGYRVILVNSNPATIMT------------DPEMADATYIEpihweVVRK 76
Cdd:COG3919    7 RVVVLGGDINALA-----------VARSLGEAGVRVIVVDRDPLGPAArsryvdevvvvpDPGDDPEAFVD-----ALLE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        77 IIEKERPDAVLPTMggqtalNCALEL--ERQGVLEEfGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEE 154
Cdd:COG3919   71 LAERHGPDVLIPTG------DEYVELlsRHRDELEE-HYRLPYPDADLLDRLLDKERFYELAEELGVPVPKTVVLDSADD 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       155 ALAVAADVGFPCIIRPS--------FTMGGSGGGIAYNREEFEEICARGLDLSPtkELLIDESLIGWKEYE--MEVVRDK 224
Cdd:COG3919  144 LDALAEDLGFPVVVKPAdsvgydelSFPGKKKVFYVDDREELLALLRRIAAAGY--ELIVQEYIPGDDGEMrgLTAYVDR 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       225 NDNCIIVCSIENF----DAMGIHTGdsITVAPAQTLTDkeyqimrnASMAVLREIGVeTGGSNVQFAVNPKNGRLIVIEM 300
Cdd:COG3919  222 DGEVVATFTGRKLrhypPAGGNSAA--RESVDDPELEE--------AARRLLEALGY-HGFANVEFKRDPRDGEYKLIEI 290
                        330       340
                 ....*....|....*....|....*....
1C3O_C       301 NPRVSRSSALASKAtGFPIAKVAAKLAVG 329
Cdd:COG3919  291 NPRFWRSLYLATAA-GVNFPYLLYDDAVG 318
PRK12833 PRK12833
acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
651-875 6.83e-15

acetyl-CoA carboxylase biotin carboxylase subunit; Provisional


Pssm-ID: 183781 [Multi-domain]  Cd Length: 467  Bit Score: 78.64  E-value: 6.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        651 ARALEAAGVPVIGTSPDAI----DRAEDRERFQHAveRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAME 726
Cdd:PRK12833   95 AEAVEAAGLIFVGPDAQTIrtmgDKARARRTARRA--GVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIR 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        727 IVYDEADLRRYFQTAVSVSN----DAPVLLDHFLDDAVEVDVDAICDGEMVliggimehieqagVHSGDSACSL------ 796
Cdd:PRK12833  173 VAHDAAQLAAELPLAQREAQaafgDGGVYLERFIARARHIEVQILGDGERV-------------VHLFERECSLqrrrqk 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 -----PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ--FAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVM 869
Cdd:PRK12833  240 ileeaPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEylFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIA 319

                  ....*.
1C3O_C        870 AGKSLA 875
Cdd:PRK12833  320 DGEPLR 325
PRK08654 PRK08654
acetyl-CoA carboxylase biotin carboxylase subunit;
649-875 3.57e-13

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236325 [Multi-domain]  Cd Length: 499  Bit Score: 73.48  E-value: 3.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        649 KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAME 726
Cdd:PRK08654   90 EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKagVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMR 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        727 IVYDEADLRRYFQTAVSVSN----DAPVLLDHFLDDAVEVDVDAICDGEmvliGGImehieqagVHSGDSACSL------ 796
Cdd:PRK08654  170 VVYSEEELEDAIESTQSIAQsafgDSTVFIEKYLEKPRHIEIQILADKH----GNV--------IHLGDRECSIqrrhqk 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 -----PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAG 871
Cdd:PRK08654  238 lieeaPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAG 317

                  ....
1C3O_C        872 KSLA 875
Cdd:PRK08654  318 EELS 321
PRK08654 PRK08654
acetyl-CoA carboxylase biotin carboxylase subunit;
109-340 4.24e-13

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236325 [Multi-domain]  Cd Length: 499  Bit Score: 73.09  E-value: 4.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAIDKAEDRRRFDVAMKKIG---LETARSGIAhTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 185
Cdd:PRK08654   96 EKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGvpvLPGTEEGIE-DIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSE 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        186 EEFEEICARGLDLS------PTkeLLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFdamgiHTgDSITVAPAQT 255
Cdd:PRK08654  175 EELEDAIESTQSIAqsafgdST--VFIEKYLEKPRHIEIQILADKHGNVIHLgdreCSIQRR-----HQ-KLIEEAPSPI 246
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        256 LTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpkNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL 335
Cdd:PRK08654  247 MTPELRERMGEAAVKAAKAINYENAGT-VEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELSFK 323

                  ....*
1C3O_C        336 MNDIT 340
Cdd:PRK08654  324 QEDIT 328
PRK08591 PRK08591
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
649-874 4.36e-13

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 236307 [Multi-domain]  Cd Length: 451  Bit Score: 72.91  E-value: 4.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        649 KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLkqP----ANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRA 724
Cdd:PRK08591   90 DFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGV--PvvpgSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRG 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        725 MEIVYDEADLRRYFQTA-----VSVSNDApVLLDHFLDDAVEVDVDAICDGEmvliGGImehieqagVHSGDSACSL--- 796
Cdd:PRK08591  168 MRVVRTEAELEKAFSMAraeakAAFGNPG-VYMEKYLENPRHIEIQVLADGH----GNA--------IHLGERDCSLqrr 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 --------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAAR 867
Cdd:PRK08591  235 hqkvleeaPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYeKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIR 314

                  ....*..
1C3O_C        868 VMAGKSL 874
Cdd:PRK08591  315 IAAGEPL 321
PRK06111 PRK06111
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
650-875 1.06e-12

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 180406 [Multi-domain]  Cd Length: 450  Bit Score: 71.60  E-value: 1.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        650 LARALEAAGVPVIGTSPDAIDRAEDRerfqhaVERLKLKQPANATV--------TAIEMAVEKAKEIGYPLVVRPSYVLG 721
Cdd:PRK06111   91 FAERCKEEGIVFIGPSADIIAKMGSK------IEARRAMQAAGVPVvpgittnlEDAEEAIAIARQIGYPVMLKASAGGG 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        722 GRAMEIVYDEADLRRYFQT----AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEmvliggimEHIeqagVHSGDSACSL- 796
Cdd:PRK06111  165 GIGMQLVETEQELTKAFESnkkrAANFFGNGEMYIEKYIEDPRHIEIQLLADTH--------GNT----VYLWERECSVq 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 ----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNE-VYLIEVNPRAARTVPFVSKATGVPLAKVA 865
Cdd:PRK06111  233 rrhqkvieeaPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKnFYFLEMNTRLQVEHPVTEEITGIDLVEQQ 312
                         250
                  ....*....|
1C3O_C        866 ARVMAGKSLA 875
Cdd:PRK06111  313 LRIAAGEKLS 322
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
625-879 1.65e-12

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 72.09  E-value: 1.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        625 DVLEIVRIEKPKGVIVQYGGQTPL----KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQ-PANAT-VTAI 698
Cdd:PRK12999   66 DIDEIIRVAKQAGVDAIHPGYGFLsenpEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPViPGSEGpIDDI 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVS-----NDApVLLDHFLDDAVEVDVDAICDGEmv 773
Cdd:PRK12999  146 EEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAkaafgNDE-VYLEKYVENPRHIEVQILGDKH-- 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        774 liGGImehieqagVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIE 841
Cdd:PRK12999  223 --GNV--------VHLYERDCSVqrrhqkvveiaPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVdADGNFYFIE 292
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
1C3O_C        842 VNPR--AARTVpfVSKATGVPLAKVAARVMAGKSLAEQGV 879
Cdd:PRK12999  293 VNPRiqVEHTV--TEEVTGIDIVQSQILIAEGATLHDLEI 330
PRK05586 PRK05586
acetyl-CoA carboxylase biotin carboxylase subunit;
654-875 2.03e-12

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180150 [Multi-domain]  Cd Length: 447  Bit Score: 70.51  E-value: 2.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        654 LEAAGVPVIGTSPDAIDRAEDrerfqhaverlklkqpanatvtaiemAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEAD 733
Cdd:PRK05586  123 MIKAGVPVVPGSEGEIENEEE--------------------------ALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEE 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        734 LRRYFQTAVSVS----NDAPVLLDHFLDDAVEVDVDAICDGemvlIGGImehieqagVHSGDSACSL-----------PA 798
Cdd:PRK05586  177 LIKAFNTAKSEAkaafGDDSMYIEKFIENPKHIEFQILGDN----YGNV--------VHLGERDCSLqrrnqkvleeaPS 244
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        799 YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875
Cdd:PRK05586  245 PVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLdKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLS 322
DdlA COG1181
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, ...
21-339 2.27e-12

D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, General function prediction only]; D-alanine-D-alanine ligase or related ATP-grasp enzyme is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440794 [Multi-domain]  Cd Length: 303  Bit Score: 68.98  E-value: 2.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        21 GQACEFD---YSGAQACKALREEGYRVILVNSNPATIMTDpemadatyiepihwevvrkiIEKERPDAVLPTMGGQTALN 97
Cdd:COG1181    9 GRSAEREvslKSGRAVAAALDKAGYDVVPIGIDVEDLPAA--------------------LKELKPDVVFPALHGRGGED 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        98 CALelerQGVLEEFGVTMIG----ATADAIDKAedrrrfdvAMKKI----GLETARSGI--AHTMEEALAVAADVGFPCI 167
Cdd:COG1181   69 GTI----QGLLELLGIPYTGsgvlASALAMDKA--------LTKRVlaaaGLPTPPYVVlrRGELADLEAIEEELGLPLF 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       168 IRPSftMGGSGGGI--AYNREEFEEICARGLDLSPtkELLIDESLIGwKEYEMEVVrdKNDNCIIVCSIE--------NF 237
Cdd:COG1181  137 VKPA--REGSSVGVskVKNAEELAAALEEAFKYDD--KVLVEEFIDG-REVTVGVL--GNGGPRALPPIEivpengfyDY 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       238 DAMGIhTGDSITVAPAQtLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVNPkNGRLIVIEMN--PRVSRSSalaskat 315
Cdd:COG1181  210 EAKYT-DGGTEYICPAR-LPEELEERIQELALKAFRALGCR-GYARVDFRLDE-DGEPYLLEVNtlPGMTPTS------- 278
                        330       340
                 ....*....|....*....|....
1C3O_C       316 GFPIAkvAAklAVGYTLDELMNDI 339
Cdd:COG1181  279 LLPKA--AA--AAGISYEELIERI 298
PRK06111 PRK06111
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
109-404 4.85e-11

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 180406 [Multi-domain]  Cd Length: 450  Bit Score: 66.20  E-value: 4.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAI----DKAEDRRrfdvAMKKIGLETArSGIAHTM---EEALAVAADVGFPCIIRPSFTMGGSGGGI 181
Cdd:PRK06111   96 KEEGIVFIGPSADIIakmgSKIEARR----AMQAAGVPVV-PGITTNLedaEEAIAIARQIGYPVMLKASAGGGGIGMQL 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        182 AYNREE----FEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENfdamgiHTGDSITVAPA 253
Cdd:PRK06111  171 VETEQEltkaFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLwereCSVQR------RHQKVIEEAPS 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        254 QTLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLD 333
Cdd:PRK06111  245 PFLDEETRKAMGERAVQAAKAIGYTNAGT-IEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLS 322
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        334 ELMNDITG----------GRTPASFEPS----IDYVVTKIPRFNFEKFAGANDRLTTQMKS-VGEVMAIGRTQQESLQK- 397
Cdd:PRK06111  323 FTQDDIKRsghaievriyAEDPKTFFPSpgkiTDLTLPGGEGVRHDHAVENGVTVTPFYDPmIAKLIAHGETREEAISRl 402

                  ....*....
1C3O_C        398 --ALRGLEV 404
Cdd:PRK06111  403 hdALEELKV 411
PRK07178 PRK07178
acetyl-CoA carboxylase biotin carboxylase subunit;
109-339 6.25e-11

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180865 [Multi-domain]  Cd Length: 472  Bit Score: 65.89  E-value: 6.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAI----DKAEDRRrfdvAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCIIRPsfTMGGSGGGI- 181
Cdd:PRK07178   95 AERGIKFIGPSAEVIrrmgDKTEARR----AMIKAGVPVtpGSEGNLADLDEALAEAERIGYPVMLKA--TSGGGGRGIr 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        182 ----------AYNREEFEEICARGldlspTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENfdamgiHTGDS 247
Cdd:PRK07178  169 rcnsreeleqNFPRVISEATKAFG-----SAEVFLEKCIVNPKHIEVQILADSHGNVVHLferdCSIQR------RNQKL 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        248 ITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLA 327
Cdd:PRK07178  238 IEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGT-VEFLLD-ADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIA 315
                         250
                  ....*....|..
1C3O_C        328 VGYTLDELMNDI 339
Cdd:PRK07178  316 SGLPLSYKQEDI 327
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
614-872 1.44e-10

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 63.42  E-value: 1.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       614 DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGG-QTPLKLARALEAAGVPVIGtSPDAIDRAEDRERFQHAVERLKLKQPAN 692
Cdd:COG0189   36 DDLTLDLGRAPELYRGEDLSEFDAVLPRIDPpFYGLALLRQLEAAGVPVVN-DPEAIRRARDKLFTLQLLARAGIPVPPT 114
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       693 ATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDaPVLLDHFLDDAVEVDVDAIC-DGE 771
Cdd:COG0189  115 LVTRDPDDLRAFLEELGGPVVLKPLDGSGGRGVFLVEDEDALESILEALTELGSE-PVLVQEFIPEEDGRDIRVLVvGGE 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       772 MVligGIMEHIEQAG-----VHSGDSACslpAYTLSQEiqdvMRQQVQKLA--FELQVRGlmnVQFAVKNNEVYLIEVNP 844
Cdd:COG0189  194 PV---AAIRRIPAEGefrtnLARGGRAE---PVELTDE----ERELALRAApaLGLDFAG---VDLIEDDDGPLVLEVNV 260
                        250       260
                 ....*....|....*....|....*...
1C3O_C       845 RAArtVPFVSKATGVPLAKVAARVMAGK 872
Cdd:COG0189  261 TPG--FRGLERATGVDIAEAIADYLEAR 286
purT PRK09288
formate-dependent phosphoribosylglycinamide formyltransferase;
60-190 1.61e-10

formate-dependent phosphoribosylglycinamide formyltransferase;


Pssm-ID: 236454 [Multi-domain]  Cd Length: 395  Bit Score: 64.39  E-value: 1.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         60 MADAtyiepihwEVVRKIIEKERPDAVLPTMggqTALNCA--LELERQGvleeFGVTmigATADAIDKAEDR---RRFdv 134
Cdd:PRK09288   61 MLDG--------DALRAVIEREKPDYIVPEI---EAIATDalVELEKEG----FNVV---PTARATRLTMNRegiRRL-- 120
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        135 AMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPsfTMGGSGGG--IAYNREEFEE 190
Cdd:PRK09288  121 AAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKP--VMSSSGKGqsVVRSPEDIEK 176
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
625-845 2.92e-10

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 64.72  E-value: 2.92e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       625 DVLEIVRIEKPKGVIVQYGGQTPL----KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQ-PANAT-VTAI 698
Cdd:COG1038   65 DIEEIIRVAKEKGVDAIHPGYGFLsenpEFARACEEAGITFIGPSPEVLEMLGDKVAARAAAIEAGVPViPGTEGpVDDL 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVS-----NDApVLLDHFLDDA--VEVDVDAICDGE 771
Cdd:COG1038  145 EEALAFAEEIGYPVMLKAAAGGGGRGMRVVRSEEELEEAFESARREAkaafgDDE-VFLEKYIERPkhIEVQILGDKHGN 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       772 MVliggimeHIeqagvHSGDsaCSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYL 839
Cdd:COG1038  224 IV-------HL-----FERD--CSVqrrhqkvveiaPAPNLDEELREAICEAAVKLAKAVGYVNAGTVEFLVdDDGNFYF 289

                 ....*.
1C3O_C       840 IEVNPR 845
Cdd:COG1038  290 IEVNPR 295
PylC COG2232
Pyrrolysine biosynthesis ligase PylC and related enzymes, ATP-grasp superfamily [Amino acid ...
618-863 8.47e-10

Pyrrolysine biosynthesis ligase PylC and related enzymes, ATP-grasp superfamily [Amino acid transport and metabolism];


Pssm-ID: 441833 [Multi-domain]  Cd Length: 370  Bit Score: 61.86  E-value: 8.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       618 FEPVTLED-VLEIVRIEKPKGVIvqYGG---QTPLKLARAleAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPAna 693
Cdd:COG2232   56 FDLEDLPAaLLELAAADDPDGLV--YGSgfeNFPELLERL--ARRLPLLGNPPEVVRRVKDPLRFFALLDELGIPHPE-- 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       694 TVTAIEMAvekakeiGYPLVVRPSYVLGGRAMEIVYDEADLR--RYFQ-----TAVSVSndapvlldhFLddavevdvda 766
Cdd:COG2232  130 TRFEPPPD-------PGPWLVKPIGGAGGWHIRPADSEAPPApgRYFQryvegTPASVL---------FL---------- 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       767 iCDG-EMVLIGGIMEHIEQAGVH----SGdsaCSLPaYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIE 841
Cdd:COG2232  184 -ADGsDARVLGFNRQLIGPAGERpfryGG---NIGP-LALPPALAEEMRAIAEALVAALGLVGLNGVDFILDGDGPYVLE 258
                        250       260
                 ....*....|....*....|..
1C3O_C       842 VNPRAARTVPFVSKATGVPLAK 863
Cdd:COG2232  259 VNPRPQASLDLYEDATGGNLFD 280
rimK_fam TIGR00768
alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione ...
635-862 1.33e-08

alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).


Pssm-ID: 273261 [Multi-domain]  Cd Length: 276  Bit Score: 57.36  E-value: 1.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         635 PKGVIVQYGgqtpLKLARALEAAGVPVIgTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVV 714
Cdd:TIGR00768   54 VRIVSMFRG----LAVLRYLESLGVPVI-NSSDAILNAGDKFLSHQLLAKAGIPLPRTGLAGSPEEALKLIEEIGFPVVL 128
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         715 RPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPV-LLDHFLDDAVEVDVDAICDGEMVLigGIMEHIE----QAGVHS 789
Cdd:TIGR00768  129 KPVFGSWGRGVSLARDRQAAESLLEHFEQLNGPQNLfLVQEYIKKPGGRDIRVFVVGDEVV--AAIYRITsghwRSNLAR 206
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
1C3O_C         790 GDSACSLPaytLSQEIQDVMRQQVQklAFELQVRGlmnVQFAVKNNEVYLIEVNPraarTVPF--VSKATGVPLA 862
Cdd:TIGR00768  207 GGKAEPCS---LTEEIEELAIKAAK--ALGLDVAG---VDLLESEDGLLVNEVNA----NPEFknSVKTTGVNIA 269
PRK08463 PRK08463
acetyl-CoA carboxylase subunit A; Validated
109-339 1.68e-08

acetyl-CoA carboxylase subunit A; Validated


Pssm-ID: 169452 [Multi-domain]  Cd Length: 478  Bit Score: 58.29  E-value: 1.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAIDKAEDRRRFDVAMKKIGL------ETARSgiaHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIA 182
Cdd:PRK08463   95 EDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIpivpgtEKLNS---ESMEEIKIFARKIGYPVILKASGGGGGRGIRVV 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        183 YNREEFE---EICAR-GLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENfdamgiHTGDSITVAPAQ 254
Cdd:PRK08463  172 HKEEDLEnafESCKReALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLcerdCSIQR------RHQKVIEIAPCP 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        255 TLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNPKNgRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE 334
Cdd:PRK08463  246 SISDNLRKTMGVTAVAAAKAVGYTNAGT-IEFLLDDYN-RFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDL 323

                  ....*
1C3O_C        335 LMNDI 339
Cdd:PRK08463  324 EQSDI 328
DdlA COG1181
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, ...
654-844 1.89e-08

D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, General function prediction only]; D-alanine-D-alanine ligase or related ATP-grasp enzyme is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440794 [Multi-domain]  Cd Length: 303  Bit Score: 57.04  E-value: 1.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAV--EKAKEIGYPLVVRPsyVLGG--RAMEIVY 729
Cdd:COG1181   75 LELLGIPYTGSGVLASALAMDKALTKRVLAAAGLPTPPYVVLRRGELADleAIEEELGLPLFVKP--AREGssVGVSKVK 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       730 DEADLRRYFQTAVSvsNDAPVLLDHFLDdAVEVDVdAICDGEMVLIGGIMEHIEQAGV-------HSGDSACSLPAyTLS 802
Cdd:COG1181  153 NAEELAAALEEAFK--YDDKVLVEEFID-GREVTV-GVLGNGGPRALPPIEIVPENGFydyeakyTDGGTEYICPA-RLP 227
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
1C3O_C       803 QEIQDVMRQQVQKlAFE-LQVRGLMNVQFAV-KNNEVYLIEVNP 844
Cdd:COG1181  228 EELEERIQELALK-AFRaLGCRGYARVDFRLdEDGEPYLLEVNT 270
PRK08591 PRK08591
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
108-190 2.10e-08

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 236307 [Multi-domain]  Cd Length: 451  Bit Score: 57.89  E-value: 2.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        108 LEEFGVTMIGATADAI----DKAEDRRrfdvAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCIIRPsfTMGGSGGGI 181
Cdd:PRK08591   95 CEDSGFTFIGPSAETIrlmgDKVTAKA----TMKKAGVPVvpGSDGPVDDEEEALAIAKEIGYPVIIKA--TAGGGGRGM 168
                          90
                  ....*....|.
1C3O_C        182 --AYNREEFEE 190
Cdd:PRK08591  169 rvVRTEAELEK 179
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
109-304 3.64e-08

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 57.84  E-value: 3.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAI----DKAEDRRrfdvAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSftMGGSGGG-- 180
Cdd:PRK12999  100 AEAGITFIGPTAEVLrllgDKVAARN----AAIKAGVPVIPGseGPIDDIEEALEFAEEIGYPIMLKAS--AGGGGRGmr 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        181 IAYNREEFEEICAR---------GLDlsptkELLIDESLIGWKEYEMEVVRDKNDNciIV------CS--------IEnf 237
Cdd:PRK12999  174 IVRSEEELEEAFERakreakaafGND-----EVYLEKYVENPRHIEVQILGDKHGN--VVhlyerdCSvqrrhqkvVE-- 244
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
1C3O_C        238 damgihtgdsitVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNPkNGRLIVIEMNPRV 304
Cdd:PRK12999  245 ------------IAPAPGLSEELRERICEAAVKLARAVGYVNAGT-VEFLVDA-DGNFYFIEVNPRI 297
PRK08462 PRK08462
acetyl-CoA carboxylase biotin carboxylase subunit;
658-877 6.13e-08

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236269 [Multi-domain]  Cd Length: 445  Bit Score: 56.29  E-value: 6.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        658 GVPVIGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLR 735
Cdd:PRK08462  101 NIKFIGPSVEVMALMSDKSKAKEVMKRagVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLE 180
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        736 RYF----QTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEmvliGGImehieqagVHSGDSACSL-----------PAYT 800
Cdd:PRK08462  181 NLYlaaeSEALSAFGDGTMYMEKFINNPRHIEVQILGDKH----GNV--------IHVGERDCSLqrrhqklieesPAVV 248
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ 877
Cdd:PRK08462  249 LDEKTRERLHETAIKAAKAIGYEGAGTFEFLLdSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ 326
PRK05586 PRK05586
acetyl-CoA carboxylase biotin carboxylase subunit;
109-339 9.22e-08

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180150 [Multi-domain]  Cd Length: 447  Bit Score: 55.87  E-value: 9.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        109 EEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNRE 186
Cdd:PRK05586   96 KECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVvpGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEE 175
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        187 EF---------EEICARGLDlsptkELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTgdsitvAPA 253
Cdd:PRK05586  176 ELikafntaksEAKAAFGDD-----SMYIEKFIENPKHIEFQILGDNYGNVVHLgerdCSLQRRNQKVLEE------APS 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        254 QTLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLD 333
Cdd:PRK05586  245 PVMTEELRKKMGEIAVKAAKAVNYKNAGT-IEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLS 322

                  ....*.
1C3O_C        334 ELMNDI 339
Cdd:PRK05586  323 IKQEDI 328
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
35-191 1.13e-06

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 51.48  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        35 KALREEGYRVILVNsnpatimtdpemADATYIEPIHWEVVRKIIEKERPDAVLPTmggQTALNCALELERQgvLEEFGVT 114
Cdd:COG0189   21 EAAQRRGHEVEVID------------PDDLTLDLGRAPELYRGEDLSEFDAVLPR---IDPPFYGLALLRQ--LEAAGVP 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
1C3O_C       115 MIGaTADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEI 191
Cdd:COG0189   84 VVN-DPEAIRRARDKLFTLQLLARAGIPVPPTLVTRDPDDLRAFLEELGGPVVLKPLDGSGGRGVFLVEDEDALESI 159
PRK07178 PRK07178
acetyl-CoA carboxylase biotin carboxylase subunit;
650-875 1.38e-06

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180865 [Multi-domain]  Cd Length: 472  Bit Score: 52.03  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        650 LARALEAAGVPVIGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEI 727
Cdd:PRK07178   90 LAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKagVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRR 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        728 VYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAV------EVDVDAICDGEMvliggimehieqagVHSGDSACSL----- 796
Cdd:PRK07178  170 CNSREELEQNFPRVISEATKAFGSAEVFLEKCIvnpkhiEVQILADSHGNV--------------VHLFERDCSIqrrnq 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 ------PAYTLSQEiqdvMRQQVQKLAfelqVR-----GLMN---VQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPL 861
Cdd:PRK07178  236 klieiaPSPQLTPE----QRAYIGDLA----VRaakavGYENagtVEFLLdADGEVYFMEMNTRVQVEHTITEEITGIDI 307
                         250
                  ....*....|....
1C3O_C        862 AKVAARVMAGKSLA 875
Cdd:PRK07178  308 VREQIRIASGLPLS 321
ATP-grasp_4 pfam13535
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ...
162-303 1.54e-06

ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.


Pssm-ID: 316093 [Multi-domain]  Cd Length: 160  Bit Score: 49.20  E-value: 1.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         162 VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGL-DLSPTKEL-----------LIdESLIGWKEYEMEVVRDKNDNCI 229
Cdd:pfam13535    1 IPYPCVIKPSVGFFSVGVYKINNREEWKAAFAAIReEIEQWKEMypeavvdggsfLV-EEYIEGEEFAVDAYFDENGEPV 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
1C3O_C         230 IVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMrNASMAVLREIGVETGGSNVQFAVNpKNGRLIVIEMNPR 303
Cdd:pfam13535   80 ILNILKHDFASSEDVSDRIYVTSASIIRETQAAFT-EFLKRINALLGLKNFPVHIELRVD-EDGQIIPIEVNPL 151
ddl PRK01372
D-alanine--D-alanine ligase; Reviewed
29-301 5.08e-06

D-alanine--D-alanine ligase; Reviewed


Pssm-ID: 234948 [Multi-domain]  Cd Length: 304  Bit Score: 49.72  E-value: 5.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         29 SGAQACKALREEGYRVILVnsnpatimtDPEMADATyiepihwevvrkIIEKERPDAVLptmggqTALN-------CAle 101
Cdd:PRK01372   24 SGAAVLAALREAGYDAHPI---------DPGEDIAA------------QLKELGFDRVF------NALHgrggedgTI-- 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        102 lerQGVLEEFGVTMIG----ATADAIDKAedrrRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSftMGGS 177
Cdd:PRK01372   75 ---QGLLELLGIPYTGsgvlASALAMDKL----RTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKPA--REGS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        178 GGG--IAYNREEFEEICARGLDLSPtkELLIDESLIGwKEYEMEVVRDKndnciIVCSIE--------NFDAMGIhTGDS 247
Cdd:PRK01372  146 SVGvsKVKEEDELQAALELAFKYDD--EVLVEKYIKG-RELTVAVLGGK-----ALPVIEivpagefyDYEAKYL-AGGT 216
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
1C3O_C        248 ITVAPAQtLTDKEYQIMRNASMAVLREIGVEtGGSNVQFAVNpKNGRLIVIEMN 301
Cdd:PRK01372  217 QYICPAG-LPAEIEAELQELALKAYRALGCR-GWGRVDFMLD-EDGKPYLLEVN 267
ATP-grasp_3 pfam02655
ATP-grasp domain; No functional information or experimental verification of function is known ...
703-845 6.03e-06

ATP-grasp domain; No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).


Pssm-ID: 396979 [Multi-domain]  Cd Length: 160  Bit Score: 47.38  E-value: 6.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         703 EKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQtavsvsndaPVLLDHFLDdAVEVDVDAICDGEMVLIGGI-MEH 781
Cdd:pfam02655   25 EELLREEKKYVVKPRDGCGGEGVRKVENGREDEAFIE---------NVLVQEFIE-GEPLSVSLLSDGEKALPLSVnRQY 94
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
1C3O_C         782 IEQAGVHSGDSACSLPA-YTLSQEIQDVMRQQVQKLAfelQVRGLMNVQFAVKNNEVYLIEVNPR 845
Cdd:pfam02655   95 IDNGGSGFVYAGNVTPSrTELKEEIIELAEEVVECLP---GLRGYVGVDLVLKDNEPYVIEVNPR 156
PRK02186 PRK02186
argininosuccinate lyase; Provisional
651-873 8.09e-06

argininosuccinate lyase; Provisional


Pssm-ID: 235010 [Multi-domain]  Cd Length: 887  Bit Score: 50.23  E-value: 8.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        651 ARALEAAGVPviGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYD 730
Cdd:PRK02186   86 SEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCAS 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        731 EADLRRYFQTAVSVSNDApVLLDHFLDDAvEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLS---QEIQD 807
Cdd:PRK02186  164 VAEAAAHCAALRRAGTRA-ALVQAYVEGD-EYSVETLTVARGHQVLGITRKHLGPPPHFVEIGHDFPAPLSApqrERIVR 241
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        808 VMRQQVQKLAFELqvrGLMNVQFAVKNNEVYLIEVNPR-AARTVP-FVSKATGVPLAKVAARVMAGKS 873
Cdd:PRK02186  242 TVLRALDAVGYAF---GPAHTELRVRGDTVVIIEINPRlAGGMIPvLLEEAFGVDLLDHVIDLHLGVA 306
MGS_CPS_I_III cd01423
Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases ...
946-1033 9.08e-06

Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.


Pssm-ID: 238711 [Multi-domain]  Cd Length: 116  Bit Score: 45.75  E-value: 9.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       946 LLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHE----GRPHIQDRIKNGEYTYIINTTSGRR 1021
Cdd:cd01423    4 LISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEepqnDKPSLRELLAEGKIDLVINLPSNRG 83
                         90
                 ....*....|....
1C3O_C      1022 AIEDSR--VIRRSA 1033
Cdd:cd01423   84 KRVLDNdyVMRRAA 97
purH PRK00881
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; ...
944-1006 1.78e-05

bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional


Pssm-ID: 234854  Cd Length: 513  Bit Score: 48.55  E-value: 1.78e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1C3O_C        944 RALLSVreGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINprlVNKVHE--GRPHIQD-RIK 1006
Cdd:PRK00881    6 RALISV--SDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIP---VTEVSDvtGFPEILDgRVK 66
PRK08463 PRK08463
acetyl-CoA carboxylase subunit A; Validated
651-912 2.15e-05

acetyl-CoA carboxylase subunit A; Validated


Pssm-ID: 169452 [Multi-domain]  Cd Length: 478  Bit Score: 48.27  E-value: 2.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        651 ARALEAAGVPVIGTSPDAIDRAEDRE--RF---QHAVERLKLKQPANATvtAIEMAVEKAKEIGYPLVVRPSYVLGGRAM 725
Cdd:PRK08463   91 AKAVEDAGIIFIGPKSEVIRKMGNKNiaRYlmkKNGIPIVPGTEKLNSE--SMEEIKIFARKIGYPVILKASGGGGGRGI 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        726 EIVYDEADLRRYFQT----AVSVSNDAPVLLDHFLDDAVEVDVDAICDGemvlIGGImehieqagVHSGDSACSL----- 796
Cdd:PRK08463  169 RVVHKEEDLENAFESckreALAYFNNDEVFMEKYVVNPRHIEFQILGDN----YGNI--------IHLCERDCSIqrrhq 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        797 ------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVM 869
Cdd:PRK08463  237 kvieiaPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLdDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIA 316
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
1C3O_C        870 AGKSL-------AEQGVTKEVIPPYYSVKEVVLPF-NKFPGVDPLLGPEMR 912
Cdd:PRK08463  317 AGEILdleqsdiKPRGFAIEARITAENVWKNFIPSpGKITEYYPALGPSVR 367
PRK12833 PRK12833
acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
1-190 2.40e-05

acetyl-CoA carboxylase biotin carboxylase subunit; Provisional


Pssm-ID: 183781 [Multi-domain]  Cd Length: 467  Bit Score: 48.21  E-value: 2.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C          1 MPKRtdIKSILILGAGPIVIgqacefdysgaQACKALREEGYRVILVNSN------PA-----TIMTDPEMADATYIEPi 69
Cdd:PRK12833    1 MPSR--IRKVLVANRGEIAV-----------RIIRAARELGMRTVAACSDadrdslAArmadeAVHIGPSHAAKSYLNP- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         70 hwEVVRKIIEKERPDAVLPTMGGqTALNCALelerQGVLEEFGVTMIGATADAI----DKAEDRRRFDVAmkkiGLET-- 143
Cdd:PRK12833   67 --AAILAAARQCGADAIHPGYGF-LSENAAF----AEAVEAAGLIFVGPDAQTIrtmgDKARARRTARRA----GVPTvp 135
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
1C3O_C        144 ARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEE 190
Cdd:PRK12833  136 GSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAA 182
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
109-304 2.61e-05

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 48.54  E-value: 2.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       109 EEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSftMGGSGGG--IAYN 184
Cdd:COG1038   99 EEAGITFIGPSPEVLEMLGDKVAARAAAIEAGVPVIPGteGPVDDLEEALAFAEEIGYPVMLKAA--AGGGGRGmrVVRS 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       185 REEFEEICAR---------GLDlsptkELLIDESLIGWKEYEMEVVRDKNDNciIV------CS--------IEnfdamg 241
Cdd:COG1038  177 EEELEEAFESarreakaafGDD-----EVFLEKYIERPKHIEVQILGDKHGN--IVhlferdCSvqrrhqkvVE------ 243
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
1C3O_C       242 ihtgdsitVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpKNGRLIVIEMNPRV 304
Cdd:COG1038  244 --------IAPAPNLDEELREAICEAAVKLAKAVGYVNAGT-VEFLVD-DDGNFYFIEVNPRI 296
PurH COG0138
AICAR transformylase/IMP cyclohydrolase PurH [Nucleotide transport and metabolism]; AICAR ...
944-1006 4.27e-05

AICAR transformylase/IMP cyclohydrolase PurH [Nucleotide transport and metabolism]; AICAR transformylase/IMP cyclohydrolase PurH is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439908  Cd Length: 512  Bit Score: 47.33  E-value: 4.27e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1C3O_C       944 RALLSVreGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINprlVNKVHE--GRPHIQD-RIK 1006
Cdd:COG0138    5 RALISV--SDKTGLVEFARALVELGVEIISTGGTAKALREAGIP---VTEVSEvtGFPEILDgRVK 65
purT PRK09288
formate-dependent phosphoribosylglycinamide formyltransferase;
653-845 8.62e-05

formate-dependent phosphoribosylglycinamide formyltransferase;


Pssm-ID: 236454 [Multi-domain]  Cd Length: 395  Bit Score: 46.28  E-value: 8.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        653 ALEAAGVPVIgtsPDAidRAE----DRE---RFqhAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPsyVLG--GR 723
Cdd:PRK09288   93 ELEKEGFNVV---PTA--RATrltmNREgirRL--AAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKP--VMSssGK 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        724 AMEIVYDEADLRRYFQTAVSVS--NDAPVLLDHFLDDAVEVDVDAIC--DGEMVLIGGImEHIEQagvhSGDSACSL-PA 798
Cdd:PRK09288  164 GQSVVRSPEDIEKAWEYAQEGGrgGAGRVIVEEFIDFDYEITLLTVRavDGGTHFCAPI-GHRQE----DGDYRESWqPQ 238
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
1C3O_C        799 yTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPR 845
Cdd:PRK09288  239 -PMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSEVSPR 284
ATP-grasp pfam02222
ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family ...
137-304 1.54e-04

ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.


Pssm-ID: 396689 [Multi-domain]  Cd Length: 169  Bit Score: 43.40  E-value: 1.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         137 KKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSfTMGGSGGGIAYNREEfeeicargLDLSPTKELLIDESLI--GWK 214
Cdd:pfam02222    1 QKLGLPTPRFMAAESLEELIEAGQELGYPCVVKAR-RGGYDGKGQYVVRSE--------ADLPQAWEELGDGPVIveEFV 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         215 EYEME----VVRDKNDNCIIVCSIENFDAMGIHTgdsITVAPAQTLTDKE---YQIMRNAsMAVLREIGVetggsnvqFA 287
Cdd:pfam02222   72 PFDRElsvlVVRSVDGETAFYPVVETIQEDGICR---LSVAPARVPQAIQaeaQDIAKRL-VDELGGVGV--------FG 139
                          170       180
                   ....*....|....*....|
1C3O_C         288 VN---PKNGRLIVIEMNPRV 304
Cdd:pfam02222  140 VElfvTEDGDLLINELAPRP 159
PRK02186 PRK02186
argininosuccinate lyase; Provisional
117-305 2.40e-04

argininosuccinate lyase; Provisional


Pssm-ID: 235010 [Multi-domain]  Cd Length: 887  Bit Score: 45.22  E-value: 2.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        117 GATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGL 196
Cdd:PRK02186   96 AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALR 175
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        197 DlSPTKELLIdESLIGWKEYEMEVVRDkNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAvLREIG 276
Cdd:PRK02186  176 R-AGTRAALV-QAYVEGDEYSVETLTV-ARGHQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRA-LDAVG 251
                         170       180
                  ....*....|....*....|....*....
1C3O_C        277 VETGGSNVQFAVnpKNGRLIVIEMNPRVS 305
Cdd:PRK02186  252 YAFGPAHTELRV--RGDTVVIIEINPRLA 278
PRK08462 PRK08462
acetyl-CoA carboxylase biotin carboxylase subunit;
112-332 2.69e-04

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236269 [Multi-domain]  Cd Length: 445  Bit Score: 44.74  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        112 GVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCIIRPSftMGGSGGGI-------- 181
Cdd:PRK08462  101 NIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVipGSDGALKSYEEAKKIAKEIGYPVILKAA--AGGGGRGMrvvedesd 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        182 ---AYNREEFEEICARGlDLSPTKELLIDESligwKEYEMEVVRDKNDNCIIV----CSIENfdamgiHTGDSITVAPAQ 254
Cdd:PRK08462  179 lenLYLAAESEALSAFG-DGTMYMEKFINNP----RHIEVQILGDKHGNVIHVgerdCSLQR------RHQKLIEESPAV 247
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        255 TLTDKEYQIMRNASMAVLREIGVETGGSnVQFAVNpKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTL 332
Cdd:PRK08462  248 VLDEKTRERLHETAIKAAKAIGYEGAGT-FEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEEL 323
ATP-grasp pfam02222
ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family ...
683-845 5.33e-04

ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.


Pssm-ID: 396689 [Multi-domain]  Cd Length: 169  Bit Score: 41.86  E-value: 5.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         683 ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRpSYVLG--GRAMEIVYDEADLrryfQTAVSVSNDAPVLLDHFLDDAV 760
Cdd:pfam02222    1 QKLGLPTPRFMAAESLEELIEAGQELGYPCVVK-ARRGGydGKGQYVVRSEADL----PQAWEELGDGPVIVEEFVPFDR 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C         761 EVDVDAI--CDGEMVlIGGIMEHIEQAGVhsgdsaCSL---PAyTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNN 835
Cdd:pfam02222   76 ELSVLVVrsVDGETA-FYPVVETIQEDGI------CRLsvaPA-RVPQAIQAEAQDIAKRLVDELGGVGVFGVELFVTED 147
                          170
                   ....*....|.
1C3O_C         836 -EVYLIEVNPR 845
Cdd:pfam02222  148 gDLLINELAPR 158
ddl PRK01372
D-alanine--D-alanine ligase; Reviewed
653-850 2.99e-03

D-alanine--D-alanine ligase; Reviewed


Pssm-ID: 234948 [Multi-domain]  Cd Length: 304  Bit Score: 40.86  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        653 ALEAAGVPVIG----TSpdAIdrAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPsyVLGGR--AME 726
Cdd:PRK01372   77 LLELLGIPYTGsgvlAS--AL--AMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKP--AREGSsvGVS 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        727 IVYDEADLRRYFQTAVSVsnDAPVLLDHFLdDAVEVDVdAICDGEMVligGIMEhIEQAGV--------HSGDSACSLPA 798
Cdd:PRK01372  151 KVKEEDELQAALELAFKY--DDEVLVEKYI-KGRELTV-AVLGGKAL---PVIE-IVPAGEfydyeakyLAGGTQYICPA 222
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
1C3O_C        799 YtLSQEIQdvmrQQVQKLAFE----LQVRGLMNVQFAVKN-NEVYLIEVN-----------PRAARTV 850
Cdd:PRK01372  223 G-LPAEIE----AELQELALKayraLGCRGWGRVDFMLDEdGKPYLLEVNtqpgmtshslvPMAARAA 285
PurK COG0026
Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and ...
120-304 3.96e-03

Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439797 [Multi-domain]  Cd Length: 353  Bit Score: 40.83  E-value: 3.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       120 ADAIDKAEDR---RRFdvaMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSfTMG--GSGGGIAYNREEFEEIcAR 194
Cdd:COG0026   81 PEALEIAQDRlleKAF---LAELGIPVAPFAAVDSLEDLEAAIAELGLPAVLKTR-RGGydGKGQVVIKSAADLEAA-WA 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C       195 GLDLSPtkelLIDESLIgwkEYEME----VVRDKNDNCIIVCSIENfdamgIHTgDSI---TVAPAQtLTDKEYQIMRNA 267
Cdd:COG0026  156 ALGGGP----CILEEFV---PFERElsviVARSPDGEVATYPVVEN-----VHR-NGIldeSIAPAR-ISEALAAEAEEI 221
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
1C3O_C       268 SMAVLREIGVeTGgsnVqFAVN---PKNGRLIVIEMNPRV 304
Cdd:COG0026  222 AKRIAEALDY-VG---V-LAVEffvTKDGELLVNEIAPRP 256
ATPgrasp_Ter pfam15632
ATP-grasp in the biosynthetic pathway with Ter operon; This ATP-grasp family is related to ...
814-884 6.42e-03

ATP-grasp in the biosynthetic pathway with Ter operon; This ATP-grasp family is related to carbamoyl phosphate synthetase. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.


Pssm-ID: 434824 [Multi-domain]  Cd Length: 131  Bit Score: 37.98  E-value: 6.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1C3O_C         814 QKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPfVSKATGVPLAKVAARVMAGKSLAEQGVTKEVI 884
Cdd:pfam15632   54 RRLAEAFGLDGLFNVQFRYDGDGPKLLEINPRMSGGIG-YSCLAGVNLPYLALKLLLGLETPDPVEPRLGL 123
PRK14016 PRK14016
cyanophycin synthetase; Provisional
654-756 9.89e-03

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 39.75  E-value: 9.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1C3O_C        654 LEAAGVPVigtspdaidraedrerfqhaverlklkqPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEI-VYDEA 732
Cdd:PRK14016  222 LAAAGVPV----------------------------PEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVnITTRE 273
                          90       100
                  ....*....|....*....|....
1C3O_C        733 DLRRYFQTAVSVSNDapVLLDHFL 756
Cdd:PRK14016  274 EIEAAYAVASKESSD--VIVERYI 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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