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Conserved domains on  [gi|157831452|pdb|1IGD|A]
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Chain A, PROTEIN G

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IgG_binding_B super family cl03188
B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such ...
 7-61 2.98e-08

B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding protein G.


The actual alignment was detected with superfamily member pfam01378:

Pssm-ID: 426228  Cd Length: 68  Bit Score: 44.86  E-value: 2.98e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
1IGD_A         7 TYKLVINGKTLKGE---TTTKAVDAETAEKAFKQYANDNGV-DGVWTYDDATKTFTVTE 61
Cdd:pfam01378  8 VYTLVYITQNTKGKngaTTVKASSPEEAEEYFRNYANENGLgDLEWSYDEETKTFTARE 66
 
Name Accession Description Interval E-value
IgG_binding_B pfam01378
B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such ...
 7-61 2.98e-08

B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding protein G.


Pssm-ID: 426228  Cd Length: 68  Bit Score: 44.86  E-value: 2.98e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
1IGD_A         7 TYKLVINGKTLKGE---TTTKAVDAETAEKAFKQYANDNGV-DGVWTYDDATKTFTVTE 61
Cdd:pfam01378  8 VYTLVYITQNTKGKngaTTVKASSPEEAEEYFRNYANENGLgDLEWSYDEETKTFTARE 66
 
Name Accession Description Interval E-value
IgG_binding_B pfam01378
B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such ...
 7-61 2.98e-08

B domain; This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding protein G.


Pssm-ID: 426228  Cd Length: 68  Bit Score: 44.86  E-value: 2.98e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
1IGD_A         7 TYKLVINGKTLKGE---TTTKAVDAETAEKAFKQYANDNGV-DGVWTYDDATKTFTVTE 61
Cdd:pfam01378  8 VYTLVYITQNTKGKngaTTVKASSPEEAEEYFRNYANENGLgDLEWSYDEETKTFTARE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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