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Conserved domains on  [gi|33357337|pdb|1MMF|E]
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Chain E, glycerol dehydrase beta subunit

Protein Classification

propanediol/glycerol family dehydratase medium subunit( domain architecture ID 10014947)

propanediol/glycerol family dehydratase medium subunit similar to Salmonella enterica propanediol dehydratase medium subunit PduD, which is part of the PduCDE complex that catalyzes the dehydration of 1,2-propanediol to propionaldehyde

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pduD PRK15042
propanediol/glycerol family dehydratase medium subunit;
9-191 1.19e-123

propanediol/glycerol family dehydratase medium subunit;


:

Pssm-ID: 237886  Cd Length: 219  Bit Score: 347.81  E-value: 1.19e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E         9 PSFTLKTREGGVASADERADEVVIGVGPAFDKHQHHTLIDMPHGAILKELIAGVEEEGLHARVVRILRTSDVSFMAWDAA 88
Cdd:PRK15042  37 PSGEGFLTEVGEAKPGTQQDEVVIAVGPAFGLAQTKTIVGIPHKEILREVIAGIEEEGLKARVVRVFRTSDVAFVAVEGA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E        89 NLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAA 168
Cdd:PRK15042 117 RLSGSGIGIGIQSKGTTVIHQKDLPPLSNLELFPQAPLLTLETYRAIGKNAARYAKGESPQPVPTLNDQMARPKYQAKAA 196

                        170       180
                 ....*....|....*....|...
1MMF_E       169 LFHIKETKHVVQDAEPVTLHIDL 191
Cdd:PRK15042 197 LLHIKETKYVVTGKKPVELRVAF 219
 
Name Accession Description Interval E-value
pduD PRK15042
propanediol/glycerol family dehydratase medium subunit;
9-191 1.19e-123

propanediol/glycerol family dehydratase medium subunit;


Pssm-ID: 237886  Cd Length: 219  Bit Score: 347.81  E-value: 1.19e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E         9 PSFTLKTREGGVASADERADEVVIGVGPAFDKHQHHTLIDMPHGAILKELIAGVEEEGLHARVVRILRTSDVSFMAWDAA 88
Cdd:PRK15042  37 PSGEGFLTEVGEAKPGTQQDEVVIAVGPAFGLAQTKTIVGIPHKEILREVIAGIEEEGLKARVVRVFRTSDVAFVAVEGA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E        89 NLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAA 168
Cdd:PRK15042 117 RLSGSGIGIGIQSKGTTVIHQKDLPPLSNLELFPQAPLLTLETYRAIGKNAARYAKGESPQPVPTLNDQMARPKYQAKAA 196

                        170       180
                 ....*....|....*....|...
1MMF_E       169 LFHIKETKHVVQDAEPVTLHIDL 191
Cdd:PRK15042 197 LLHIKETKYVVTGKKPVELRVAF 219
Dehydratase_MU pfam02288
Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol ...
 36-148 5.02e-52

Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.


Pssm-ID: 426702  Cd Length: 108  Bit Score: 162.37  E-value: 5.02e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E         36 PAFDKHQHHTlidMPHGAILKELIAGVEEEGLHARVVrILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPL 115
Cdd:pfam02288   1 PAIGVYVSDT---IEHAEVLREVLAGIEEEGVPYRVV-VSRTSDVVFLAHQAAKLSGLGVGIGIQSKGTVVIHQKDLPPL 76

                          90       100       110
                  ....*....|....*....|....*....|...
1MMF_E        116 SNLELFSQaPLLTLETYRQIGKNAARYARKESP 148
Cdd:pfam02288  77 SPLELFPQ-PLLDPETLRAIGANAARLVKGEPF 108
 
Name Accession Description Interval E-value
pduD PRK15042
propanediol/glycerol family dehydratase medium subunit;
9-191 1.19e-123

propanediol/glycerol family dehydratase medium subunit;


Pssm-ID: 237886  Cd Length: 219  Bit Score: 347.81  E-value: 1.19e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E         9 PSFTLKTREGGVASADERADEVVIGVGPAFDKHQHHTLIDMPHGAILKELIAGVEEEGLHARVVRILRTSDVSFMAWDAA 88
Cdd:PRK15042  37 PSGEGFLTEVGEAKPGTQQDEVVIAVGPAFGLAQTKTIVGIPHKEILREVIAGIEEEGLKARVVRVFRTSDVAFVAVEGA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E        89 NLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAA 168
Cdd:PRK15042 117 RLSGSGIGIGIQSKGTTVIHQKDLPPLSNLELFPQAPLLTLETYRAIGKNAARYAKGESPQPVPTLNDQMARPKYQAKAA 196

                        170       180
                 ....*....|....*....|...
1MMF_E       169 LFHIKETKHVVQDAEPVTLHIDL 191
Cdd:PRK15042 197 LLHIKETKYVVTGKKPVELRVAF 219
Dehydratase_MU pfam02288
Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol ...
 36-148 5.02e-52

Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.


Pssm-ID: 426702  Cd Length: 108  Bit Score: 162.37  E-value: 5.02e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1MMF_E         36 PAFDKHQHHTlidMPHGAILKELIAGVEEEGLHARVVrILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPL 115
Cdd:pfam02288   1 PAIGVYVSDT---IEHAEVLREVLAGIEEEGVPYRVV-VSRTSDVVFLAHQAAKLSGLGVGIGIQSKGTVVIHQKDLPPL 76

                          90       100       110
                  ....*....|....*....|....*....|...
1MMF_E        116 SNLELFSQaPLLTLETYRQIGKNAARYARKESP 148
Cdd:pfam02288  77 SPLELFPQ-PLLDPETLRAIGANAARLVKGEPF 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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