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Conserved domains on  [gi|28948945|pdb|1NKW|1]
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Chain 1, 50S ribosomal protein L33

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 29-81 1.18e-24

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 86.79  E-value: 1.18e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
1NKW_1       29 AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 29-81 1.18e-24

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 86.79  E-value: 1.18e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
1NKW_1       29 AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 28-81 3.37e-22

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 80.59  E-value: 3.37e-22
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....
1NKW_1      28 MAkdGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:COG0267  1 MA--GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
36-81 2.68e-20

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 75.54  E-value: 2.68e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
1NKW_1        36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 28-81 1.74e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 71.33  E-value: 1.74e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
1NKW_1        28 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 29-81 1.18e-24

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 86.79  E-value: 1.18e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
1NKW_1       29 AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 28-81 3.37e-22

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 80.59  E-value: 3.37e-22
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....
1NKW_1      28 MAkdGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:COG0267  1 MA--GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
36-81 2.68e-20

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 75.54  E-value: 2.68e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
1NKW_1        36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 28-81 1.74e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 71.33  E-value: 1.74e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
1NKW_1        28 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpl33 CHL00104
ribosomal protein L33
 28-81 7.01e-12

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 54.98  E-value: 7.01e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
1NKW_1       28 MAKD-GPRIIVKMESSAGTG----------FYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:CHL00104  1 MAKGkDVRVTVILECTSCVRngvnkestgiSRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
rpmG PRK00504
50S ribosomal protein L33; Validated
 49-81 3.78e-09

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 47.60  E-value: 3.78e-09
                        10        20        30
                ....*....|....*....|....*....|...
1NKW_1       49 YTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 81
Cdd:PRK00504 18 YTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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