|
Name |
Accession |
Description |
Interval |
E-value |
| Nth |
COG0177 |
Endonuclease III [Replication, recombination and repair]; |
14-212 |
1.51e-123 |
|
Endonuclease III [Replication, recombination and repair];
Pssm-ID: 439947 [Multi-domain] Cd Length: 198 Bit Score: 348.24 E-value: 1.51e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 14 LDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Cdd:COG0177 1 LERLKELYPDAKTELDYRDPFELLVATILSAQTTDERVNKATPRLFARYPTPEALAAADLEELEELIRPIGLYRNKAKNI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDsVLEVEKTLMKIIP 173
Cdd:COG0177 81 IALARILVEKYGGEVPETREELESLPGVGRKTANVVLNFAFGKPAIAVDTHVHRVSNRLGLVPGKD-PEEVEKDLMKLIP 159
|
170 180 190
....*....|....*....|....*....|....*....
1ORN_A 174 KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGK 212
Cdd:COG0177 160 KEYWGDLHHLLILHGRYICKARKPKCEECPLADLCPYYG 198
|
|
| nth |
TIGR01083 |
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily ... |
7-199 |
5.34e-113 |
|
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273434 [Multi-domain] Cd Length: 192 Bit Score: 321.25 E-value: 5.34e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 7 KQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLY 86
Cdd:TIGR01083 1 RQKAQEILERLRKNYPHPTTELDFNNPFELLVATILSAQATDKRVNKATPKLFEVYPTPQALAQAGLEELEEYIKSIGLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 87 RNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDsVLEVEK 166
Cdd:TIGR01083 81 RNKAKNIIELCRKLVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSKGKD-PIKVEE 159
|
170 180 190
....*....|....*....|....*....|...
1ORN_A 167 TLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQC 199
Cdd:TIGR01083 160 DLMKLVPREFWVKLHHWLILHGRYTCKARKPLC 192
|
|
| ENDO3c |
smart00478 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
42-190 |
5.00e-64 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 214684 [Multi-domain] Cd Length: 149 Bit Score: 195.56 E-value: 5.00e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 42 LSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGV 121
Cdd:smart00478 1 LSQQTTDERVNKATERLFEKFPTPEDLAAADEEELEELIRGLGFYRRKARYLIELARILVEEYGGEVPDDREELLKLPGV 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
1ORN_A 122 GRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRY 190
Cdd:smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPEEDWRELNLLLIDFGRT 149
|
|
| PRK10702 |
PRK10702 |
endonuclease III; Provisional |
22-213 |
3.59e-62 |
|
endonuclease III; Provisional
Pssm-ID: 182661 [Multi-domain] Cd Length: 211 Bit Score: 193.31 E-value: 3.59e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 22 PDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLI 101
Cdd:PRK10702 18 PHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENVIKTCRILL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 102 DKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRwDDSVLEVEKTLMKIIPKEEWSITH 181
Cdd:PRK10702 98 EQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCH 176
|
170 180 190
....*....|....*....|....*....|..
1ORN_A 182 HRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK 213
Cdd:PRK10702 177 HWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208
|
|
| ENDO3c |
cd00056 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
34-188 |
6.03e-62 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 238013 [Multi-domain] Cd Length: 158 Bit Score: 190.53 E-value: 6.03e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYR-TPHDYIAVPLEELEQDIRSIGlYRNKARNIQKLCAMLIDKYNGEV---P 109
Cdd:cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGpTPEALAAADEEELRELIRSLG-YRRKAKYLKELARAIVEGFGGLVlddP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
1ORN_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFG 188
Cdd:cd00056 80 DAREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDLG 158
|
|
| HhH-GPD |
pfam00730 |
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of ... |
38-174 |
1.91e-49 |
|
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Pssm-ID: 425841 [Multi-domain] Cd Length: 141 Bit Score: 158.22 E-value: 1.91e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 38 IAVVLSAQCTDALVNKVTKRLFEK-YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELM 116
Cdd:pfam00730 1 VSAILSQQTSDKAVNKITERLFEKfFPTPEDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
1ORN_A 117 K-LPGVGRKTANVVVSVAFGV--PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK 174
Cdd:pfam00730 81 AlLKGVGRWTAEAVLIFALGRpdPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP 141
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nth |
COG0177 |
Endonuclease III [Replication, recombination and repair]; |
14-212 |
1.51e-123 |
|
Endonuclease III [Replication, recombination and repair];
Pssm-ID: 439947 [Multi-domain] Cd Length: 198 Bit Score: 348.24 E-value: 1.51e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 14 LDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Cdd:COG0177 1 LERLKELYPDAKTELDYRDPFELLVATILSAQTTDERVNKATPRLFARYPTPEALAAADLEELEELIRPIGLYRNKAKNI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDsVLEVEKTLMKIIP 173
Cdd:COG0177 81 IALARILVEKYGGEVPETREELESLPGVGRKTANVVLNFAFGKPAIAVDTHVHRVSNRLGLVPGKD-PEEVEKDLMKLIP 159
|
170 180 190
....*....|....*....|....*....|....*....
1ORN_A 174 KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGK 212
Cdd:COG0177 160 KEYWGDLHHLLILHGRYICKARKPKCEECPLADLCPYYG 198
|
|
| nth |
TIGR01083 |
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily ... |
7-199 |
5.34e-113 |
|
endonuclease III; This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273434 [Multi-domain] Cd Length: 192 Bit Score: 321.25 E-value: 5.34e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 7 KQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLY 86
Cdd:TIGR01083 1 RQKAQEILERLRKNYPHPTTELDFNNPFELLVATILSAQATDKRVNKATPKLFEVYPTPQALAQAGLEELEEYIKSIGLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 87 RNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDsVLEVEK 166
Cdd:TIGR01083 81 RNKAKNIIELCRKLVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSKGKD-PIKVEE 159
|
170 180 190
....*....|....*....|....*....|...
1ORN_A 167 TLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQC 199
Cdd:TIGR01083 160 DLMKLVPREFWVKLHHWLILHGRYTCKARKPLC 192
|
|
| ENDO3c |
smart00478 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
42-190 |
5.00e-64 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 214684 [Multi-domain] Cd Length: 149 Bit Score: 195.56 E-value: 5.00e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 42 LSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGV 121
Cdd:smart00478 1 LSQQTTDERVNKATERLFEKFPTPEDLAAADEEELEELIRGLGFYRRKARYLIELARILVEEYGGEVPDDREELLKLPGV 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
1ORN_A 122 GRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRY 190
Cdd:smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPEEDWRELNLLLIDFGRT 149
|
|
| PRK10702 |
PRK10702 |
endonuclease III; Provisional |
22-213 |
3.59e-62 |
|
endonuclease III; Provisional
Pssm-ID: 182661 [Multi-domain] Cd Length: 211 Bit Score: 193.31 E-value: 3.59e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 22 PDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLI 101
Cdd:PRK10702 18 PHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENVIKTCRILL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 102 DKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRwDDSVLEVEKTLMKIIPKEEWSITH 181
Cdd:PRK10702 98 EQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCH 176
|
170 180 190
....*....|....*....|....*....|..
1ORN_A 182 HRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK 213
Cdd:PRK10702 177 HWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208
|
|
| ENDO3c |
cd00056 |
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), ... |
34-188 |
6.03e-62 |
|
endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Pssm-ID: 238013 [Multi-domain] Cd Length: 158 Bit Score: 190.53 E-value: 6.03e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYR-TPHDYIAVPLEELEQDIRSIGlYRNKARNIQKLCAMLIDKYNGEV---P 109
Cdd:cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGpTPEALAAADEEELRELIRSLG-YRRKAKYLKELARAIVEGFGGLVlddP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
1ORN_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFG 188
Cdd:cd00056 80 DAREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDLG 158
|
|
| HhH-GPD |
pfam00730 |
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of ... |
38-174 |
1.91e-49 |
|
HhH-GPD superfamily base excision DNA repair protein; This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Pssm-ID: 425841 [Multi-domain] Cd Length: 141 Bit Score: 158.22 E-value: 1.91e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 38 IAVVLSAQCTDALVNKVTKRLFEK-YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELM 116
Cdd:pfam00730 1 VSAILSQQTSDKAVNKITERLFEKfFPTPEDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
1ORN_A 117 K-LPGVGRKTANVVVSVAFGV--PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK 174
Cdd:pfam00730 81 AlLKGVGRWTAEAVLIFALGRpdPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP 141
|
|
| HP0602 |
COG2231 |
3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily [Replication, recombination and ... |
32-212 |
1.21e-26 |
|
3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily [Replication, recombination and repair];
Pssm-ID: 441832 [Multi-domain] Cd Length: 220 Bit Score: 101.84 E-value: 1.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 32 NPFELLIAVVLsAQCTD------ALVNKVTKRLFekyrTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYN 105
Cdd:COG2231 28 TPFEVIVGAIL-TQNTSwknvekAIANLKEAGLL----DPEALAALDPEELAELIRPSGFYNQKAKRLKNLARWLVERYG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 106 GEVPR--------DRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKE-- 175
Cdd:COG2231 103 GGLEKlkalpteeLREELLSLKGIGPETADSILLYAFNRPVFVVDAYTRRIFSRLGLIEEDASYDELQRLFEENLPPDva 182
|
170 180 190 200
....*....|....*....|....*....|....*....|.
1ORN_A 176 ---EWsithHRMIF-FGRYHCKAQsPQCPSCPLLHLCREGK 212
Cdd:COG2231 183 lynEF----HALIVeHGKEYCKKK-PKCEECPLRDLCPYGG 218
|
|
| MutY |
COG1194 |
Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs [Replication, recombination and ... |
90-209 |
8.98e-21 |
|
Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs [Replication, recombination and repair];
Pssm-ID: 440807 [Multi-domain] Cd Length: 350 Bit Score: 88.66 E-value: 8.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 90 ARNIQKlCAMLI-DKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVskrlgFCRW-----DDSVLE 163
Cdd:COG1194 85 ARNLHK-AAQQVvEEHGGVFPDTYEELLALPGIGPYTAAAIASIAFGEPAPIVDGNVKRV-----LSRLfaiegPIGSPA 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
1ORN_A 164 VEKTL----MKIIPKEewsithhRM-IF------FGRYHCKAQSPQCPSCPLLHLCR 209
Cdd:COG1194 159 AKKELwalaEELLPPE-------RPgDFnqalmdLGATVCTPKKPKCLLCPLQDDCA 208
|
|
| PRK10880 |
PRK10880 |
adenine DNA glycosylase; |
31-208 |
9.05e-15 |
|
adenine DNA glycosylase;
Pssm-ID: 182805 [Multi-domain] Cd Length: 350 Bit Score: 72.05 E-value: 9.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 31 RNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRnKARNIQKLCAMLIDKYNGEVPR 110
Cdd:PRK10880 28 KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGEFPE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 111 DRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRlgfCR----WDDSVlEVEKTLMKI----IPKEEWSITHH 182
Cdd:PRK10880 107 TFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLAR---CYavsgWPGKK-EVENRLWQLseqvTPAVGVERFNQ 182
|
170 180
....*....|....*....|....*.
1ORN_A 183 RMIFFGRYHCKAQSPQCPSCPLLHLC 208
Cdd:PRK10880 183 AMMDLGAMVCTRSKPKCELCPLQNGC 208
|
|
| AlkA |
COG0122 |
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and ... |
30-152 |
3.95e-13 |
|
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair];
Pssm-ID: 439892 [Multi-domain] Cd Length: 255 Bit Score: 66.45 E-value: 3.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 30 HRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPL------EEL----EQDIRSIGLYRNKARNIQKLCAM 99
Cdd:COG0122 81 RPDPFEALVRAILGQQVSVAAARTIWRRLVALFGEPIEGPGGGLyafptpEALaaasEEELRACGLSRRKARYLRALARA 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
1ORN_A 100 LIDkynGEVPRD----------RDELMKLPGVGRKTANVVVSVAFGVPAI--AVDTHVERVSKRL 152
Cdd:COG0122 161 VAD---GELDLEalaglddeeaIARLTALPGIGPWTAEMVLLFALGRPDAfpAGDLGLRRALGRL 222
|
|
| PRK13910 |
PRK13910 |
DNA glycosylase MutY; Provisional |
51-225 |
9.28e-11 |
|
DNA glycosylase MutY; Provisional
Pssm-ID: 172427 [Multi-domain] Cd Length: 289 Bit Score: 60.04 E-value: 9.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 51 VNKVTKRLF----EKYRTPHDYIAVPLEELEQDIRSIGLYrNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTA 126
Cdd:PRK13910 7 INTVVERFYspflEAFPTLKDLANAPLEEVLLLWRGLGYY-SRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 127 NVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEwSITHHR-MIFFGRYHCKAQsPQCPSCPLL 205
Cdd:PRK13910 86 NAILCFGFREKSACVDANIKRVLLRLFGLDPNIHAKDLQIKANDFLNLNE-SFNHNQaLIDLGALICSPK-PKCAICPLN 163
|
170 180
....*....|....*....|
1ORN_A 206 HLCReGKKRMRKREEKAANQ 225
Cdd:PRK13910 164 PYCL-GKNNPEKHTLKKKQE 182
|
|
| HHH |
pfam00633 |
Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated ... |
103-132 |
8.06e-09 |
|
Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain.
Pssm-ID: 425789 [Multi-domain] Cd Length: 30 Bit Score: 49.72 E-value: 8.06e-09
10 20 30
....*....|....*....|....*....|
1ORN_A 103 KYNGEVPRDRDELMKLPGVGRKTANVVVSV 132
Cdd:pfam00633 1 SLEGLIPASVEELLALPGVGPKTAEAILSY 30
|
|
| ogg |
TIGR00588 |
8-oxoguanine DNA-glycosylase (ogg); All proteins in this family for which functions are known ... |
28-151 |
3.19e-07 |
|
8-oxoguanine DNA-glycosylase (ogg); All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 211589 [Multi-domain] Cd Length: 310 Bit Score: 49.91 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 28 LVHRNPFELLIAVVLSAQCTDALVNKVTKRL---------------FEKYRTPHdyiAVPLEELEQDIRSIGL-YRnkAR 91
Cdd:TIGR00588 114 LLRQDPFECLISFICSSNNNIARITRMVERLcqafgprlitldgvtYHGFPSLH---ALTGPEAEAHLRKLGLgYR--AR 188
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1ORN_A 92 NIQKLCAMLIDKYNG--------EVPRD--RDELMKLPGVGRKTANVVVSVAFGVP-AIAVDTHVERVSKR 151
Cdd:TIGR00588 189 YIRETARALLEEQGGrawlqqirGASYEdaREALCELPGVGPKVADCICLMGLDKPqAVPVDVHVWRIANR 259
|
|
| PRK13913 |
PRK13913 |
3-methyladenine DNA glycosylase; Provisional |
76-154 |
5.19e-03 |
|
3-methyladenine DNA glycosylase; Provisional
Pssm-ID: 184390 Cd Length: 218 Bit Score: 36.75 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ORN_A 76 LEQDIRSIGLYRNKARNIQKLC-AMLID-----KYNGEVprDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVS 149
Cdd:PRK13913 80 LAECVRPSGFYNQKAKRLIDLSeNILKDfgsfeNFKQEV--TREWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFL 157
|
....*
1ORN_A 150 KRLGF 154
Cdd:PRK13913 158 KKLGI 162
|
|
| |
