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Conserved domains on  [gi|58177137|pdb|1W6S|D]
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Chain D, METHANOL DEHYDROGENASE SUBUNIT 2

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MDH super family cl03530
Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic ...
 1-70 1.00e-46

Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidizes methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.


The actual alignment was detected with superfamily member pfam02315:

Pssm-ID: 396752  Cd Length: 88  Bit Score: 143.36  E-value: 1.00e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W6S_D         1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAK 70
Cdd:pfam02315 19 YDGTNCKAPGNCWEPKPGYPDKVAGSKYDPKHDPKELNKQQESIKAMEERNAKRVENFKKTGKFVYDVKK 88
 
Name Accession Description Interval E-value
MDH pfam02315
Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic ...
 1-70 1.00e-46

Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidizes methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.


Pssm-ID: 396752  Cd Length: 88  Bit Score: 143.36  E-value: 1.00e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W6S_D         1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAK 70
Cdd:pfam02315 19 YDGTNCKAPGNCWEPKPGYPDKVAGSKYDPKHDPKELNKQQESIKAMEERNAKRVENFKKTGKFVYDVKK 88
 
Name Accession Description Interval E-value
MDH pfam02315
Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic ...
 1-70 1.00e-46

Methanol dehydrogenase beta subunit; Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidizes methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.


Pssm-ID: 396752  Cd Length: 88  Bit Score: 143.36  E-value: 1.00e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W6S_D         1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAK 70
Cdd:pfam02315 19 YDGTNCKAPGNCWEPKPGYPDKVAGSKYDPKHDPKELNKQQESIKAMEERNAKRVENFKKTGKFVYDVKK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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