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Conserved domains on  [gi|159164154|pdb|2DJR|A]
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Chain A, Zinc finger BED domain-containing protein 2

Protein Classification

zinc finger BED domain-containing protein( domain architecture ID 10652289)

zinc finger BED domain-containing protein (ZBED) may function as a transcriptional regulator

Gene Ontology:  GO:0046872|GO:0003677
PubMed:  10973053|23533661

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-62 4.73e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


:

Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 49.73  E-value: 4.73e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
2DJR_A          9 EAWEYFHLAPARAghHPNQYATCRLCGRQVSRGPgvNVGTTALWKHLKSMHREE 62
Cdd:smart00614  1 KVWKHFTLILEKD--NGKQRAKCKYCGKKLSRSS--KGGTSNLRRHLRRKHPAR 50
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-62 4.73e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 49.73  E-value: 4.73e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
2DJR_A          9 EAWEYFHLAPARAghHPNQYATCRLCGRQVSRGPgvNVGTTALWKHLKSMHREE 62
Cdd:smart00614  1 KVWKHFTLILEKD--NGKQRAKCKYCGKKLSRSS--KGGTSNLRRHLRRKHPAR 50
zf-BED pfam02892
BED zinc finger;
9-60 3.09e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 39.66  E-value: 3.09e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
2DJR_A         9 EAWEYFHLAPARaghhpNQYATCRLCGRQVSRGPgvnvGTTALWKHLKSMHR 60
Cdd:pfam02892  2 KVWKYFRELPLD-----ETKAVCRYCGKILSRGG----GTSNLIRHLRRKHP 44
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-62 4.73e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 49.73  E-value: 4.73e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
2DJR_A          9 EAWEYFHLAPARAghHPNQYATCRLCGRQVSRGPgvNVGTTALWKHLKSMHREE 62
Cdd:smart00614  1 KVWKHFTLILEKD--NGKQRAKCKYCGKKLSRSS--KGGTSNLRRHLRRKHPAR 50
zf-BED pfam02892
BED zinc finger;
9-60 3.09e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 39.66  E-value: 3.09e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
2DJR_A         9 EAWEYFHLAPARaghhpNQYATCRLCGRQVSRGPgvnvGTTALWKHLKSMHR 60
Cdd:pfam02892  2 KVWKYFRELPLD-----ETKAVCRYCGKILSRGG----GTSNLIRHLRRKHP 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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