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Conserved domains on  [gi|254220840|pdb|2KL5|A]
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Chain A, Uncharacterized protein yutD

Protein Classification

YutD family protein( domain architecture ID 10008577)

YutD family protein is a DUF1027 domain-containing protein; similar to Bacillus subtilis protein YutD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
12-102 2.66e-55

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


:

Pssm-ID: 443567  Cd Length: 91  Bit Score: 166.55  E-value: 2.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KL5_A       12 MILIQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFG 91
Cdd:COG4470   1 MIKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFG 80

                        90
                ....*....|.
2KL5_A       92 CAYFVLKRIRK 102
Cdd:COG4470  81 CAYFVLKKVNP 91
 
Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
12-102 2.66e-55

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


Pssm-ID: 443567  Cd Length: 91  Bit Score: 166.55  E-value: 2.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KL5_A       12 MILIQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFG 91
Cdd:COG4470   1 MIKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFG 80

                        90
                ....*....|.
2KL5_A       92 CAYFVLKRIRK 102
Cdd:COG4470  81 CAYFVLKKVNP 91
YutD-like pfam06265
Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial ...
 15-98 3.53e-51

Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial proteins, including YutD from Bacillus subtilis (PDBe:2kl5), a probable antitoxin component of a putative type VII toxin-antitoxin (TA) system, that probably neutralizes cognate toxin YutE.


Pssm-ID: 428856  Cd Length: 84  Bit Score: 155.76  E-value: 3.53e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KL5_A         15 IQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFGCAY 94
Cdd:pfam06265   1 INGHEYELVENYRDAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDDNRKATKDTKISALQDYLYEYCNFGCAY 80


                  ....
2KL5_A         95 FVLK 98
Cdd:pfam06265  81 FVLK 84
 
Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
12-102 2.66e-55

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


Pssm-ID: 443567  Cd Length: 91  Bit Score: 166.55  E-value: 2.66e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KL5_A       12 MILIQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFG 91
Cdd:COG4470   1 MIKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFG 80

                        90
                ....*....|.
2KL5_A       92 CAYFVLKRIRK 102
Cdd:COG4470  81 CAYFVLKKVNP 91
YutD-like pfam06265
Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial ...
 15-98 3.53e-51

Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial proteins, including YutD from Bacillus subtilis (PDBe:2kl5), a probable antitoxin component of a putative type VII toxin-antitoxin (TA) system, that probably neutralizes cognate toxin YutE.


Pssm-ID: 428856  Cd Length: 84  Bit Score: 155.76  E-value: 3.53e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KL5_A         15 IQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFGCAY 94
Cdd:pfam06265   1 INGHEYELVENYRDAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDDNRKATKDTKISALQDYLYEYCNFGCAY 80


                  ....
2KL5_A         95 FVLK 98
Cdd:pfam06265  81 FVLK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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