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Conserved domains on  [gi|350610334|pdb|2LJL|A]
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Chain A, kDa heat shock protein

Protein Classification

heat shock 9/12 family protein( domain architecture ID 10513914)

heat shock 9/12 family protein is part of a group of small heat shock proteins (Hsp) that function as chaperone proteins and are ubiquitously involved in nascent protein folding, typically by protecting proteins from misfolding and it can be induced by a variety of stresses, including high osmolarity, oxidative stress, heat shock and nutrient limitation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HSP9_HSP12 pfam04119
Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an ...
1-59 6.61e-26

Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an increase of 100 fold, upon entry into stationary phase in yeast.


:

Pssm-ID: 427724  Cd Length: 59  Bit Score: 91.10  E-value: 6.61e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
2LJL_A          1 MSDAGRKGFGEKASEALKPDSQKSYAEQGKEYITDKADKVAGKVQPEDNKGVFQGVHDS 59
Cdd:pfam04119   1 MSDAGRKDFTDKASEAVKPDSQKSTLEKAKEKVTDTADKVAGKVQPDDQKSTTQKAGDK 59
 
Name Accession Description Interval E-value
HSP9_HSP12 pfam04119
Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an ...
1-59 6.61e-26

Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an increase of 100 fold, upon entry into stationary phase in yeast.


Pssm-ID: 427724  Cd Length: 59  Bit Score: 91.10  E-value: 6.61e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
2LJL_A          1 MSDAGRKGFGEKASEALKPDSQKSYAEQGKEYITDKADKVAGKVQPEDNKGVFQGVHDS 59
Cdd:pfam04119   1 MSDAGRKDFTDKASEAVKPDSQKSTLEKAKEKVTDTADKVAGKVQPDDQKSTTQKAGDK 59
 
Name Accession Description Interval E-value
HSP9_HSP12 pfam04119
Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an ...
1-59 6.61e-26

Heat shock protein 9/12; These heat shock proteins (Hsp9 and Hsp12) are strongly expressed, an increase of 100 fold, upon entry into stationary phase in yeast.


Pssm-ID: 427724  Cd Length: 59  Bit Score: 91.10  E-value: 6.61e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
2LJL_A          1 MSDAGRKGFGEKASEALKPDSQKSYAEQGKEYITDKADKVAGKVQPEDNKGVFQGVHDS 59
Cdd:pfam04119   1 MSDAGRKDFTDKASEAVKPDSQKSTLEKAKEKVTDTADKVAGKVQPDDQKSTTQKAGDK 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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