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Conserved domains on  [gi|512125274|pdb|2M6X|A]
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Chain A, p7

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HCV_p7 cd20903
Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for ...
3-46 4.88e-15

Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for virus production. The p7 monomer is comprised of 2 trans-membrane helices connected by a cytosolic loop, and oligomerizes to form cation-specific ion channels. These ion channels dissipate pH gradients in secretory vesicles potentially protecting acid-labile intracellular virions during egress (the rupturing of the infected cell and release of viral contents). p7 protein has at least two different functions in culture, one via the formation of these ion channels, the other through its specific interaction with the non-structural viral protein NS2. Several compounds targeting p7 have been investigated as anti-HCV drugs.


:

Pssm-ID: 411017  Cd Length: 58  Bit Score: 61.86  E-value: 4.88e-15
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
2M6X_A       3 KNVIVLNAASAAGNHGFFWGLLVVTLAWHVKGRLVPGATYLSLG 46
Cdd:cd20903  3 ENLVVLNAASAAGTHGLLWFLLFFCAAWYIKGRLVPAATYALLG 46
 
Name Accession Description Interval E-value
HCV_p7 cd20903
Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for ...
3-46 4.88e-15

Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for virus production. The p7 monomer is comprised of 2 trans-membrane helices connected by a cytosolic loop, and oligomerizes to form cation-specific ion channels. These ion channels dissipate pH gradients in secretory vesicles potentially protecting acid-labile intracellular virions during egress (the rupturing of the infected cell and release of viral contents). p7 protein has at least two different functions in culture, one via the formation of these ion channels, the other through its specific interaction with the non-structural viral protein NS2. Several compounds targeting p7 have been investigated as anti-HCV drugs.


Pssm-ID: 411017  Cd Length: 58  Bit Score: 61.86  E-value: 4.88e-15
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
2M6X_A       3 KNVIVLNAASAAGNHGFFWGLLVVTLAWHVKGRLVPGATYLSLG 46
Cdd:cd20903  3 ENLVVLNAASAAGTHGLLWFLLFFCAAWYIKGRLVPAATYALLG 46
 
Name Accession Description Interval E-value
HCV_p7 cd20903
Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for ...
3-46 4.88e-15

Hepatitis C virus p7 protein; Hepatitis C virus (HCV) p7 protein is a viroporin essential for virus production. The p7 monomer is comprised of 2 trans-membrane helices connected by a cytosolic loop, and oligomerizes to form cation-specific ion channels. These ion channels dissipate pH gradients in secretory vesicles potentially protecting acid-labile intracellular virions during egress (the rupturing of the infected cell and release of viral contents). p7 protein has at least two different functions in culture, one via the formation of these ion channels, the other through its specific interaction with the non-structural viral protein NS2. Several compounds targeting p7 have been investigated as anti-HCV drugs.


Pssm-ID: 411017  Cd Length: 58  Bit Score: 61.86  E-value: 4.88e-15
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
2M6X_A       3 KNVIVLNAASAAGNHGFFWGLLVVTLAWHVKGRLVPGATYLSLG 46
Cdd:cd20903  3 ENLVVLNAASAAGTHGLLWFLLFFCAAWYIKGRLVPAATYALLG 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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