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Conserved domains on  [gi|188596208|pdb|3CCM|U]
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Chain U, 50S ribosomal protein L24e

Protein Classification

eL24 family ribosomal protein( domain architecture ID 10005268)

eL24 family ribosomal protein such as prokaryotic 50S ribosomal protein L24e which is part of the large ribosomal subunit (50S), and fungal 60S ribosomal Protein L24 which is part of the large ribosomal subunit (60S)

Gene Ontology:  GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPL24A COG2075
Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 2.99e-33

Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


:

Pssm-ID: 441678  Cd Length: 63  Bit Score: 108.08  E-value: 2.99e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
3CCM_U       1 MPRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEA 63
Cdd:COG2075  1 MVETRTCSFCGREIEPGTGKMYVRNDGTVLWFCSSKCEKNMKLGRDPRKLKWTRKYRKGKEKR 63
 
Name Accession Description Interval E-value
RPL24A COG2075
Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 2.99e-33

Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441678  Cd Length: 63  Bit Score: 108.08  E-value: 2.99e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
3CCM_U       1 MPRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEA 63
Cdd:COG2075  1 MVETRTCSFCGREIEPGTGKMYVRNDGTVLWFCSSKCEKNMKLGRDPRKLKWTRKYRKGKEKR 63
PRK00807 PRK00807
50S ribosomal protein L24e; Validated
 4-54 2.86e-27

50S ribosomal protein L24e; Validated


Pssm-ID: 179131  Cd Length: 52  Bit Score: 92.73  E-value: 2.86e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
3CCM_U        4 TRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTD 54
Cdd:PRK00807  1 TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTK 51
Ribosomal_L24e pfam01246
Ribosomal protein L24e;
3-61 6.43e-26

Ribosomal protein L24e;


Pssm-ID: 460131  Cd Length: 63  Bit Score: 89.52  E-value: 6.43e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
3CCM_U         3 RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAG 61
Cdd:pfam01246  1 KTETCSFSGYKIYPGHGKRFVRNDGKVFRFCSSKCEKLFKQKRNPRKLKWTKAYRRAHK 59
Ribosomal_L24e_L24 cd00472
Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea ...
 2-53 9.31e-24

Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30.


Pssm-ID: 100103  Cd Length: 54  Bit Score: 83.78  E-value: 9.31e-24
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
3CCM_U       2 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWT 53
Cdd:cd00472  1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWT 52
TRASH smart00746
metallochaperone-like domain;
7-40 8.20e-09

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 45.83  E-value: 8.20e-09
                          10        20        30
                  ....*....|....*....|....*....|....
3CCM_U          7 CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENN 40
Cdd:smart00746  1 CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSK 34
 
Name Accession Description Interval E-value
RPL24A COG2075
Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 2.99e-33

Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441678  Cd Length: 63  Bit Score: 108.08  E-value: 2.99e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
3CCM_U       1 MPRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEA 63
Cdd:COG2075  1 MVETRTCSFCGREIEPGTGKMYVRNDGTVLWFCSSKCEKNMKLGRDPRKLKWTRKYRKGKEKR 63
PRK00807 PRK00807
50S ribosomal protein L24e; Validated
 4-54 2.86e-27

50S ribosomal protein L24e; Validated


Pssm-ID: 179131  Cd Length: 52  Bit Score: 92.73  E-value: 2.86e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
3CCM_U        4 TRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTD 54
Cdd:PRK00807  1 TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTK 51
Ribosomal_L24e pfam01246
Ribosomal protein L24e;
3-61 6.43e-26

Ribosomal protein L24e;


Pssm-ID: 460131  Cd Length: 63  Bit Score: 89.52  E-value: 6.43e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
3CCM_U         3 RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAG 61
Cdd:pfam01246  1 KTETCSFSGYKIYPGHGKRFVRNDGKVFRFCSSKCEKLFKQKRNPRKLKWTKAYRRAHK 59
PRK14891 PRK14891
50S ribosomal protein L24e/unknown domain fusion protein; Provisional
 1-67 8.10e-26

50S ribosomal protein L24e/unknown domain fusion protein; Provisional


Pssm-ID: 184885 [Multi-domain]  Cd Length: 131  Bit Score: 91.55  E-value: 8.10e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3CCM_U         1 MPRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDEA 67
Cdd:PRK14891   1 MVETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPAAAAT 67
Ribosomal_L24e_L24 cd00472
Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea ...
 2-53 9.31e-24

Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30.


Pssm-ID: 100103  Cd Length: 54  Bit Score: 83.78  E-value: 9.31e-24
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
3CCM_U       2 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWT 53
Cdd:cd00472  1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWT 52
TRASH smart00746
metallochaperone-like domain;
7-40 8.20e-09

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 45.83  E-value: 8.20e-09
                          10        20        30
                  ....*....|....*....|....*....|....
3CCM_U          7 CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENN 40
Cdd:smart00746  1 CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSK 34
PTZ00033 PTZ00033
60S ribosomal protein L24; Provisional
 3-57 1.54e-03

60S ribosomal protein L24; Provisional


Pssm-ID: 140068  Cd Length: 125  Bit Score: 34.22  E-value: 1.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
3CCM_U         3 RTRECDYCGTDIEPGTGTMFV----HKDGATTHFCSSKCENNADLGREARNLEWTDTAR 57
Cdd:PTZ00033   2 RTIACEFSHFAVHPGHGRRYVpfafLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYR 60
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 7-37 2.36e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 31.96  E-value: 2.36e-03
                         10        20        30
                 ....*....|....*....|....*....|.
3CCM_U         7 CDYCGTDIEPGTGTMFVHKDGATTHFCSSKC 37
Cdd:pfam06467  6 CWFCKKLIKNKPTVIVLQNDGSVGQFCSQSC 36
YHS COG3350
Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone [Inorganic ion transport ...
 10-37 2.56e-03

Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone [Inorganic ion transport and metabolism];


Pssm-ID: 442578  Cd Length: 56  Bit Score: 32.37  E-value: 2.56e-03
                       10        20
               ....*....|....*....|....*...
3CCM_U      10 CGTDIEPGTGTMFVHKDGATTHFCSSKC 37
Cdd:COG3350 12 CGMTVDPGSAAYTAEYDGKTYYFCSEEC 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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