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Conserved domains on  [gi|188596211|pdb|3CCM|X]
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Chain X, 50S ribosomal protein L31e

Protein Classification

RPL31A family protein( domain architecture ID 10788369)

RPL31A family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPL31A COG2097
Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-92 1.41e-39

Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


:

Pssm-ID: 441700  Cd Length: 89  Bit Score: 126.12  E-value: 1.41e-39
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X       1 MSASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEE 80
Cdd:COG2097  1 MSEEDFEERVYTIPLRKVKLAPRTKRADRAIKLIREFLARHMKVEEEKVKIDPSLNEKIWSRGREKPPRKVRVRAVKFEE 80

                       90
               ....*....|..
3CCM_X      81 EgeaIVEAETAE 92
Cdd:COG2097 81 G---EVEVELAE 89
 
Name Accession Description Interval E-value
RPL31A COG2097
Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-92 1.41e-39

Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441700  Cd Length: 89  Bit Score: 126.12  E-value: 1.41e-39
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X       1 MSASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEE 80
Cdd:COG2097  1 MSEEDFEERVYTIPLRKVKLAPRTKRADRAIKLIREFLARHMKVEEEKVKIDPSLNEKIWSRGREKPPRKVRVRAVKFEE 80

                       90
               ....*....|..
3CCM_X      81 EgeaIVEAETAE 92
Cdd:COG2097 81 G---EVEVELAE 89
PRK01192 PRK01192
50S ribosomal protein L31e; Reviewed
 2-92 4.08e-37

50S ribosomal protein L31e; Reviewed


Pssm-ID: 234916  Cd Length: 89  Bit Score: 119.63  E-value: 4.08e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X        2 SASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEE 81
Cdd:PRK01192  1 SAKEVEERIYTIPLRDVKKVPRTKRADRAVKLVREFLARHFKADEDKVKIDPSINEKIWERGREKPPSKVRVRVAKKGED 80

                        90
                ....*....|.
3CCM_X       82 GeaIVEAETAE 92
Cdd:PRK01192 81 G--VVEAELAE 89
Ribosomal_L31e cd00463
Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea ...
 3-87 1.10e-28

Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea and eukaryotes, binds the 23S rRNA and is one of six protein components encircling the polypeptide exit tunnel. It is a component of the eukaryotic 60S (large) ribosomal subunit, and the archaeal 50S (large) ribosomal subunit.


Pssm-ID: 199209  Cd Length: 83  Bit Score: 98.41  E-value: 1.10e-28
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X       3 ASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEdaVRLDPSINEAAWARGRANTPSKIRVRAARFEEEG 82
Cdd:cd00463  1 IEEVVEREYTINLRKRKHVPRKKRAPRAIKEIRKFAAKHMKTED--VRIDPKLNEAIWSRGIEKPPRRVRVRVSRKREET 78


               ....*
3CCM_X      83 EAIVE 87
Cdd:cd00463 79 EDAVL 83
Ribosomal_L31e pfam01198
Ribosomal protein L31e;
24-83 5.83e-09

Ribosomal protein L31e;


Pssm-ID: 460108  Cd Length: 82  Bit Score: 48.32  E-value: 5.83e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X        24 HKRADKAMILIREHLAKHFSVDEdaVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGE 83
Cdd:pfam01198 21 KKRAPRALKEIRKFAMKEMGTPD--VRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDE 78
 
Name Accession Description Interval E-value
RPL31A COG2097
Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-92 1.41e-39

Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441700  Cd Length: 89  Bit Score: 126.12  E-value: 1.41e-39
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X       1 MSASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEE 80
Cdd:COG2097  1 MSEEDFEERVYTIPLRKVKLAPRTKRADRAIKLIREFLARHMKVEEEKVKIDPSLNEKIWSRGREKPPRKVRVRAVKFEE 80

                       90
               ....*....|..
3CCM_X      81 EgeaIVEAETAE 92
Cdd:COG2097 81 G---EVEVELAE 89
PRK01192 PRK01192
50S ribosomal protein L31e; Reviewed
 2-92 4.08e-37

50S ribosomal protein L31e; Reviewed


Pssm-ID: 234916  Cd Length: 89  Bit Score: 119.63  E-value: 4.08e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X        2 SASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEE 81
Cdd:PRK01192  1 SAKEVEERIYTIPLRDVKKVPRTKRADRAVKLVREFLARHFKADEDKVKIDPSINEKIWERGREKPPSKVRVRVAKKGED 80

                        90
                ....*....|.
3CCM_X       82 GeaIVEAETAE 92
Cdd:PRK01192 81 G--VVEAELAE 89
Ribosomal_L31e cd00463
Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea ...
 3-87 1.10e-28

Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea and eukaryotes, binds the 23S rRNA and is one of six protein components encircling the polypeptide exit tunnel. It is a component of the eukaryotic 60S (large) ribosomal subunit, and the archaeal 50S (large) ribosomal subunit.


Pssm-ID: 199209  Cd Length: 83  Bit Score: 98.41  E-value: 1.10e-28
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X       3 ASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEdaVRLDPSINEAAWARGRANTPSKIRVRAARFEEEG 82
Cdd:cd00463  1 IEEVVEREYTINLRKRKHVPRKKRAPRAIKEIRKFAAKHMKTED--VRIDPKLNEAIWSRGIEKPPRRVRVRVSRKREET 78


               ....*
3CCM_X      83 EAIVE 87
Cdd:cd00463 79 EDAVL 83
Ribosomal_L31e pfam01198
Ribosomal protein L31e;
24-83 5.83e-09

Ribosomal protein L31e;


Pssm-ID: 460108  Cd Length: 82  Bit Score: 48.32  E-value: 5.83e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3CCM_X        24 HKRADKAMILIREHLAKHFSVDEdaVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGE 83
Cdd:pfam01198 21 KKRAPRALKEIRKFAMKEMGTPD--VRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDE 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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