NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|224510915|pdb|3G74|B]
View 

Chain B, Protein of unknown function

Protein Classification

stage V sporulation protein AA( domain architecture ID 10573345)

stage V sporulation protein AA may be involved in the fifth stage of sporulation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SporV_AA pfam12164
Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, ...
 5-93 7.50e-28

Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up.


:

Pssm-ID: 463479  Cd Length: 89  Bit Score: 96.78  E-value: 7.50e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3G74_B          5 SDTLYIK*DQAVEITKKQVTVGDVAKLQCKNKNITNRLKS*KLLEDTTKGKKRYIVSI*KIIE*ADQTFQNVDIQNIGET 84
Cdd:pfam12164   1 SETVYIKLDQNVEVKKPDVTLGDVAQVYCSDKAIEAKLKALKVYTFKEKDKNRYVISVLKVIEAIHKEYPNVDVQNLGET 80


                  ....*....
3G74_B         85 ECVVEFKTP 93
Cdd:pfam12164  81 DFIVEYEKK 89
 
Name Accession Description Interval E-value
SporV_AA pfam12164
Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, ...
 5-93 7.50e-28

Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up.


Pssm-ID: 463479  Cd Length: 89  Bit Score: 96.78  E-value: 7.50e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3G74_B          5 SDTLYIK*DQAVEITKKQVTVGDVAKLQCKNKNITNRLKS*KLLEDTTKGKKRYIVSI*KIIE*ADQTFQNVDIQNIGET 84
Cdd:pfam12164   1 SETVYIKLDQNVEVKKPDVTLGDVAQVYCSDKAIEAKLKALKVYTFKEKDKNRYVISVLKVIEAIHKEYPNVDVQNLGET 80


                  ....*....
3G74_B         85 ECVVEFKTP 93
Cdd:pfam12164  81 DFIVEYEKK 89
 
Name Accession Description Interval E-value
SporV_AA pfam12164
Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, ...
 5-93 7.50e-28

Stage V sporulation protein AA; This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up.


Pssm-ID: 463479  Cd Length: 89  Bit Score: 96.78  E-value: 7.50e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3G74_B          5 SDTLYIK*DQAVEITKKQVTVGDVAKLQCKNKNITNRLKS*KLLEDTTKGKKRYIVSI*KIIE*ADQTFQNVDIQNIGET 84
Cdd:pfam12164   1 SETVYIKLDQNVEVKKPDVTLGDVAQVYCSDKAIEAKLKALKVYTFKEKDKNRYVISVLKVIEAIHKEYPNVDVQNLGET 80


                  ....*....
3G74_B         85 ECVVEFKTP 93
Cdd:pfam12164  81 DFIVEYEKK 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH