|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
4-376 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 842.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 323
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELARTL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
3GLH_H 324 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQ 376
Cdd:PRK07994 321 PPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHPAAPLPEPEVPPQ 373
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
4-367 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 582.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAlgndmAAIEL---RMRELA 320
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAA-----AQQSLyseQIRAFA 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
3GLH_H 321 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 367
Cdd:PRK14949 316 EQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPEKP 362
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
4-364 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 539.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIElRMRELARTI 323
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERD-RLLDLAKRL 319
|
330 340 350 360
....*....|....*....|....*....|....*....|.
3GLH_H 324 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 364
Cdd:PRK14969 320 SPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRP 360
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
4-365 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 529.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPaaLGND---MAAIELRMRELA 320
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFP--KIWNtifIKNYKNQIQKIA 318
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
3GLH_H 321 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 365
Cdd:PRK14961 319 QNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAITK 363
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
6-360 |
0e+00 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 513.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 85
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 86 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 165
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 166 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 245
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 246 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 325
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKLSL 320
|
330 340 350
....*....|....*....|....*....|....*
3GLH_H 326 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 360
Cdd:TIGR02397 321 EFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
4-361 |
5.00e-170 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 477.76 E-value: 5.00e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVlarkwrPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 162
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 163 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAsgdgqvstqavsa 242
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIA------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 243 mLGTLD-DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 321
Cdd:COG2812 222 -FGLLDrRELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNEDERERLQELAR 300
|
330 340 350 360
....*....|....*....|....*....|....*....|
3GLH_H 322 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 361
Cdd:COG2812 301 RLSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
4-364 |
5.22e-170 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 491.53 E-value: 5.22e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMReLARTI 323
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHR-LAQTI 319
|
330 340 350 360
....*....|....*....|....*....|....*....|.
3GLH_H 324 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 364
Cdd:PRK08691 320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAP 360
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
4-375 |
7.91e-164 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 472.28 E-value: 7.91e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGV 78
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCqgpdgQGGITATPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 79 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 158
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 159 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 238
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 239 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM---AAIELR 315
Cdd:PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATdpeAAEVAR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 316 mreLARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPR 375
Cdd:PRK14951 321 ---LAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKPAAAAEAAAPAE 377
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
4-364 |
3.60e-162 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 470.90 E-value: 3.60e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGV 78
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCtgadgEGGITAQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 79 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 158
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 159 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 238
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 239 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIElRMRE 318
Cdd:PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEAD-DIRR 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
3GLH_H 319 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 364
Cdd:PRK12323 320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRP 365
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
4-364 |
2.69e-161 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 472.80 E-value: 2.69e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA-AIELrmRELART 322
Cdd:PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPeAADL--RRFAEL 318
|
330 340 350 360
....*....|....*....|....*....|....*....|..
3GLH_H 323 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 364
Cdd:PRK07003 319 LSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEP 360
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
6-367 |
3.13e-154 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 450.65 E-value: 3.13e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 85
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 86 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 165
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 166 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 245
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 246 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 325
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISA 321
|
330 340 350 360
....*....|....*....|....*....|....*....|..
3GLH_H 326 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 367
Cdd:PRK14960 322 QDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPLAP 363
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
4-358 |
1.78e-152 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 441.23 E-value: 1.78e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL-RMRELART 322
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDeLFKELSEK 320
|
330 340 350
....*....|....*....|....*....|....*.
3GLH_H 323 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 358
Cdd:PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVK 356
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
4-372 |
7.61e-142 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 412.59 E-value: 7.61e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL-GNDMAaielRMRELART 322
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALiENDSE----QLRQLAKL 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
3GLH_H 323 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM--PLPEPE 372
Cdd:PRK14958 317 LDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPSAanAIPETE 368
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
6-370 |
6.04e-133 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 392.73 E-value: 6.04e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCD 80
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGpdgdgGPTIDLCGVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 81 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 160
Cdd:PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 161 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 240
Cdd:PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 241 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN-DMAAIE-LRMRE 318
Cdd:PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDpSLSEAErTRGAE 330
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
3GLH_H 319 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRaLAFHPRMPLPE 370
Cdd:PRK09111 331 FAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIR-LAYAADLPTPD 381
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
4-370 |
4.09e-129 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 382.17 E-value: 4.09e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--SPAALgNDMAAIEL-RMRELA 320
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAvgEPGDL-LDLSEAELaELRAQA 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
3GLH_H 321 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 370
Cdd:PRK14965 320 AAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAPGAPVSE 369
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
4-365 |
8.19e-127 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 375.57 E-value: 8.19e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARtI 323
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAK-I 319
|
330 340 350 360
....*....|....*....|....*....|....*....|..
3GLH_H 324 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 365
Cdd:PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQKK 361
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
4-297 |
1.24e-116 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 347.58 E-value: 1.24e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE----WEALLVEMLGLLHRIAM 297
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNlnkfWKQLEEEIRNILLNKSL 298
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
7-292 |
1.30e-115 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 346.25 E-value: 1.30e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 7 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 86
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 87 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 166
Cdd:PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 167 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 246
Cdd:PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
3GLH_H 247 LDDDQALSLVEAMVEANGERVMALINEaaARGIEWEALLVEMLGLL 292
Cdd:PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKE--LEDYEAEMVLDEMMLFL 285
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
4-314 |
4.43e-108 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 328.69 E-value: 4.43e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 82
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 83 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 162
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 163 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 242
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
3GLH_H 243 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 314
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEK 312
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
4-360 |
2.47e-102 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 313.25 E-value: 2.47e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV-------EMLGLLHRI---AMVQLSPAALGNDMAAIE 313
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLdcieffrELLFLKHGIkneAFIGIKAERLPEKLREFD 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
3GLH_H 314 LRMRELArtipptdIQLYYQTLligrKELPYAPDRRMGVEMTLLRAL 360
Cdd:PRK06647 321 LSQIERA-------ISVLLETY----RDLQFSVNPRYELEINFSKIL 356
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
4-376 |
7.84e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 306.43 E-value: 7.84e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--------TATP 75
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIddadylqeVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 76 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 155
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 156 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-----S 230
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAfsvesE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 231 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-LSPAALGNDM 309
Cdd:PRK14955 241 GEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHnLRSTRLVERP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
3GLH_H 310 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQ 376
Cdd:PRK14955 321 DAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAPTAAAAPTGG 387
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
5-294 |
1.89e-101 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 307.47 E-value: 1.89e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 5 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITATPCGVCDNCR 83
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCqNPTEDQEPCNQCASCK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEwEALLVEMLGLLHR 294
Cdd:PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVA-PAHFLHDLTLFFR 292
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
4-292 |
1.27e-99 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 308.04 E-value: 1.27e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC--ETGITATPCGVCDN 81
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 82 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 161
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 162 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQaIASGDGQVSTQAVS 241
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
3GLH_H 242 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 292
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFY 290
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
4-292 |
4.56e-98 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 306.74 E-value: 4.56e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCdnc 82
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDlLEPCQEC--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 83 reIEQ-GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 161
Cdd:PRK07133 80 --IENvNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 162 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 241
Cdd:PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
3GLH_H 242 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 292
Cdd:PRK07133 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLV 288
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
4-368 |
1.17e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 297.75 E-value: 1.17e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-QLSPAALGN-DMAAIELRM-RELA 320
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLrQAGEAALASlDLPEDEARQwLGWA 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
3GLH_H 321 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRaLAFHPR-MPL 368
Cdd:PRK14959 321 KRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLN-LAMLPRlMPV 368
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
9-370 |
5.97e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 292.07 E-value: 5.97e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 88
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 168
Cdd:PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 169 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 248
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 249 DDQALSLVEAMVEANGERVMALINEA--AARGIeweALLVEMLGLLHRIAMVQLSP---AALGNDmaaIELRMRELARTI 323
Cdd:PRK14964 243 KHILEDLVEAILLGDAQSALNVFRELcnTSNPV---IILEGMLQIIYEICYFSITKeidFLLGED---LITRIKSLKIGS 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
3GLH_H 324 PPTDIQLyYQTLLIGRKELPYAPDRRMGVEMTLLRaLAFHPRMPLPE 370
Cdd:PRK14964 317 TIFLSRL-WQMLLKGIQEVKSSTCVKQAAEMMIIR-LCYLSDLPSPQ 361
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
7-289 |
2.03e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 287.43 E-value: 2.03e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 7 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 86
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 87 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 166
Cdd:PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 167 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 246
Cdd:PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
|
250 260 270 280
....*....|....*....|....*....|....*....|...
3GLH_H 247 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 289
Cdd:PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAI 284
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
4-360 |
3.80e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 291.08 E-value: 3.80e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--------TATP 75
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIddpvylqeVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 76 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 155
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 156 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-----S 230
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAfsvgsE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 231 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-QLSPAALGNDM 309
Cdd:PRK14954 241 AEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLyNLRSTRLIERP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
3GLH_H 310 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 360
Cdd:PRK14954 321 ESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLI 371
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
6-358 |
1.31e-90 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 284.36 E-value: 1.31e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETgITA--TPCGVCDNCR 83
Cdd:PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQN-LTAdgEACNECESCV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLhRIAMVQLSPAALG--NDMAAIELRMRELAR 321
Cdd:PRK14971 243 LNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHF-RDLLVCKDAATLQllEVGESIRQRYLEQAQ 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
3GLH_H 322 TippTDIQLYYQTL-LIGRKELPY--APDRRMGVEMTLLR 358
Cdd:PRK14971 322 K---CPMSFLYRALkLCNQCDLNYraSKNKRLLVELTLIQ 358
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
5-303 |
6.32e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 273.75 E-value: 6.32e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 5 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 84
Cdd:PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 85 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 164
Cdd:PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 165 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 244
Cdd:PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 245 GTLDDDQALSLVEAMVE-ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 303
Cdd:PRK14956 244 GYHGIEFLTSFIKSLIDpDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLA 303
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
4-292 |
7.07e-88 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 277.11 E-value: 7.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 4 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 83
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 163
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 243
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 292
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLL 289
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-262 |
7.78e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 279.56 E-value: 7.78e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 88
Cdd:PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 RF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 166
Cdd:PRK07764 85 GPgsLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 167 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 245
Cdd:PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAgAGPEGVTYERAVALLG 244
|
250
....*....|....*..
3GLH_H 246 TLDDdqalSLVEAMVEA 262
Cdd:PRK07764 245 VTDS----ALIDEAVDA 257
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
6-360 |
8.87e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 269.04 E-value: 8.87e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT----PCGVCDN 81
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttikTCEQCTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 82 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 161
Cdd:PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 162 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASGDGQVSTQ 238
Cdd:PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAsmsAKSDNIISPQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 239 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 318
Cdd:PRK06645 248 VINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRTKS 327
|
330 340 350 360
....*....|....*....|....*....|....*....|..
3GLH_H 319 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 360
Cdd:PRK06645 328 ILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSI 369
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
9-321 |
4.45e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 261.70 E-value: 4.45e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCeTGITATPCGVCDNCREIEQG 88
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 168
Cdd:PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 169 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGdGQVSTQAVSAMLGTLD 248
Cdd:PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG-TPVTRKQVEEALGLPP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 249 DDQALSLVEAMVEanGERVMALINEA-------AARGIEwEALLVEMLGLLH-RIAM-----VQLSPAALGNDMAAIELR 315
Cdd:PRK14963 242 QERLRGIAAALAQ--GDAAEALSGAAqlyrdgfAARTLV-EGLLEAFRAALYaELGLgggprLEGAEPRLLAAMTALDEQ 318
|
....*.
3GLH_H 316 MRELAR 321
Cdd:PRK14963 319 MERFAR 324
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
7-360 |
3.99e-81 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 259.04 E-value: 3.99e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 7 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 86
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 87 QGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 164
Cdd:PRK14952 81 PNGpgSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 165 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAM 243
Cdd:PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAgAADTHVTYQRALGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 244 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AALGNDMAAIEL--RMREL 319
Cdd:PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPdaAARGVVDAPEDVleRMREQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|.
3GLH_H 320 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 360
Cdd:PRK14952 321 AARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
8-305 |
2.82e-74 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 234.77 E-value: 2.82e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 8 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCeTGITATpcgvcdncreiEQ 87
Cdd:PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ-PGYDDP-----------NE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 88 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 167
Cdd:PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 168 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 247
Cdd:PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNIL 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
3GLH_H 248 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEaLLVEMLGLLHRIAMVQLSPAAL 305
Cdd:PRK14970 234 DYDTYINVTDLILENKIPELLLAFNEILRKGFDGH-HFIAGLASHFRDLMVSKTPATI 290
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
23-182 |
9.17e-54 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 175.09 E-value: 9.17e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 23 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 102
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 103 -KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 181
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
3GLH_H 182 D 182
Cdd:pfam13177 161 S 161
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
24-321 |
2.98e-51 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 172.85 E-value: 2.98e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 24 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDnCREIEQGRFVDLIEI--DAASR 101
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELnpEEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 102 T-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 180
Cdd:COG0470 80 QiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 181 LDVEQIRHQLEhilnEEHIAHEprALQLLARAAEGSLRDALSLTDQAiasgdgQVSTQAVSAMLGTLDDDQALSLVEamv 260
Cdd:COG0470 160 PSEEEALAWLR----EEGVDED--ALEAILRLAGGDPRAAINLLQAL------AGRKELLEDLAALLSRDRALELLD--- 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
3GLH_H 261 eangervmALINEAAARGIEWeallveMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 321
Cdd:COG0470 225 --------ALLKAEALELLDW------LLKWLLDNLPLEYAGEDLARAYEALSEADRRLGR 271
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
28-220 |
5.02e-51 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 168.96 E-value: 5.02e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 28 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVED 106
Cdd:TIGR00678 1 YQQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPeGQSIKVDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 107 TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 186
Cdd:TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEAL 160
|
170 180 190
....*....|....*....|....*....|....
3GLH_H 187 RHQLEHILNEEHiaheprALQLLARAAEGSLRDA 220
Cdd:TIGR00678 161 LQWLIRQGISEE------AAELLLALAGGSPGRA 188
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
24-223 |
3.33e-33 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 126.19 E-value: 3.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 24 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI--DAASr 101
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 102 TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLaTTDPQKLPVTILSRCLQFHLKA 180
Cdd:PRK08058 90 IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPsGGTTAILL-TENKHQILPTILSRCQVVEFRP 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
3GLH_H 181 LDVEQIRHQLEhilnEEHIahePRALQLLARAAEGSLRDALSL 223
Cdd:PRK08058 169 LPPESLIQRLQ----EEGI---SESLATLLAGLTNSVEEALAL 204
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
12-318 |
3.36e-30 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 118.17 E-value: 3.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHaYLFSGTRGVGKTSIARLLAKGL---NCETGITATPcgVCD----NCRE 84
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELygdPWENNFTEFN--VADffdqGKKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 85 IEQG-RFVDLIEIDAASRTKVedtRDLLDNV-----QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 158
Cdd:PRK12402 85 LVEDpRFAHFLGTDKRIRSSK---IDNFKHVlkeyaSYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 159 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALsLTDQAIASGDGQVSTQ 238
Cdd:PRK12402 162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGEITME 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 239 AVSAMLGTLD-DDQALSLVEAMVEANGERVMALIneaaargiewEALLV-------EMLGLLHRIAMVQLSP---AALGN 307
Cdd:PRK12402 241 AAYEALGDVGtDEVIESLLDAAEAGDFTDARKTL----------DDLLIdeglsggEVLEELLRVARSRYRGdnlARLHR 310
|
330
....*....|.
3GLH_H 308 DMAAIELRMRE 318
Cdd:PRK12402 311 LAADADARLTD 321
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
39-185 |
2.69e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 112.66 E-value: 2.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 39 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASR----------TKVEDT 107
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGhKPCGECMSCHLFGQGSHPDFYEITPLSDepengrkllqIKIDAV 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3GLH_H 108 RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 185
Cdd:PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE 176
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
235-370 |
1.25e-27 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 105.81 E-value: 1.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 235 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-AALGNDMAAIE 313
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPdAADDLLLPEEE 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
3GLH_H 314 L-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRaLAFHPRMPLPE 370
Cdd:pfam12169 81 RaRLAELAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLR-LAYAASLPPPE 137
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
18-285 |
1.50e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 106.15 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 18 FADVVGQEHVLTAL------ANGLSLGRIH---HAYLFSGTRGVGKTSIARLLAKGLNCeTGITATPCGVCDNCREIEQG 88
Cdd:PRK07940 4 WDDLVGQEAVVAELraaaraARADVAAAGSgmtHAWLFTGPPGSGRSVAARAFAAALQC-TDPDEPGCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 RFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 167
Cdd:PRK07940 83 THPDVRVVAPEGLSiGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 168 TILSRCLQFHLKALDVEQIRHQLehiLNEEHIAHEpRAlQLLARAAEGSLRDA--LSLTDQAIASGDgqvstQAVSAMLG 245
Cdd:PRK07940 163 TIRSRCRHVALRTPSVEAVAEVL---VRRDGVDPE-TA-RRAARASQGHIGRArrLATDEEARARRA-----EVLNLALR 232
|
250 260 270 280
....*....|....*....|....*....|....*....|
3GLH_H 246 TLDDDQALSLVEAMVEANGERVMALINEAAARgiEWEALL 285
Cdd:PRK07940 233 LARVSDAVAAAEELVKAAEAEAKALTAERDEA--ETEELR 270
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
9-231 |
6.59e-25 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 104.78 E-value: 6.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAyLFSGTRGVGKTSIARLLAKGLNCEtgitatpcgvcdncrei 85
Cdd:PRK13342 2 LAERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDAP----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 86 eqgrfvdLIEIDAASrTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEppEHVKFLLATT-DPQ- 163
Cdd:PRK13342 64 -------FEALSAVT-SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTeNPSf 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3GLH_H 164 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE---HIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 231
Cdd:PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKergLVELDDEALDALARLANGDARRALNLLELAALGV 204
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
181-245 |
1.96e-23 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 92.18 E-value: 1.96e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 181 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 245
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
38-226 |
2.62e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 99.01 E-value: 2.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 38 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL--IEIDAASRT-KVEDTRDLLDNV 114
Cdd:PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNfvLEPEEADKTiKVDQVRELVSFV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 115 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 194
Cdd:PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL 178
|
170 180 190
....*....|....*....|....*....|..
3GLH_H 195 NEEhiaHEPRALQLLARAAEGSLRdALSLTDQ 226
Cdd:PRK05707 179 PES---DERERIELLTLAGGSPLR-ALQLHEQ 206
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
15-224 |
1.02e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 92.02 E-value: 1.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 15 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD------NCREIEQG 88
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADpdpaspVWRQIAQG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 ---------RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 159
Cdd:PRK09112 99 ahpnllhitRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 160 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRalQLLARAAEGSLRDALSLT 224
Cdd:PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEIT--EALLQRSKGSVRKALLLL 241
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
14-270 |
3.61e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 90.47 E-value: 3.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 14 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS----IARLLAKGLNCETGITATPCGVCD------NCR 83
Cdd:PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATlayrMARFLLATPPPGGDGAVPPPTSLAidpdhpVAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 84 EIEQGRFVDLIEI-----DAASRTK----VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 154
Cdd:PRK07471 94 RIAAGAHGGLLTLerswnEKGKRLRtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 155 FLLATTDPQKLPVTILSRCLQFHLKALDVEqirhQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLtdqaiASGDGQ 234
Cdd:PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPE----DVIDALAAAGPDLPDDPRAALAALAEGSVGRALRL-----AGGDGL 244
|
250 260 270
....*....|....*....|....*....|....*....
3GLH_H 235 VSTQAVSAMLGTL---DDDQALSLVEAMVEANGERVMAL 270
Cdd:PRK07471 245 ALYRRLTALLDTLprlDRRALHALADAAAGRDRAARFAL 283
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
18-217 |
1.64e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 88.03 E-value: 1.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 18 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLncetgITATPCGVCDNCReIEQGRFVDLIEI- 96
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL-----LSQGSPSKNIRRR-LEEGNHPDLLWVe 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 97 -------------DAASRT---------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEpPEHVK 154
Cdd:PRK07399 77 ptyqhqgklitasEAEEAGlkrkappqiRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGT 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
3GLH_H 155 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 217
Cdd:PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAA 218
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
35-191 |
2.21e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 87.38 E-value: 2.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 35 LSLGRIHHAYLFSGtrGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDN 113
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQViKTDTIRELVKN 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3GLH_H 114 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAlDVEQIRHQLE 191
Cdd:PRK07276 96 FSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
39-178 |
2.80e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 87.89 E-value: 2.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 39 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNCREIEQGRFVD--------------LIEIDAA---- 99
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPdGEPCGTCAACNWFAQGNHPDyrivrpealaaeapGAADEAKeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 100 ------SRT-----KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 168
Cdd:PRK06964 99 deggkkTKApskeiKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
170
....*....|
3GLH_H 169 ILSRCLQFHL 178
Cdd:PRK06964 179 ILSRCRQFPM 188
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
181-244 |
4.03e-19 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 80.59 E-value: 4.03e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 181 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 244
Cdd:cd18133 1 LDQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDdGKISLDRVYQAV 65
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
18-197 |
7.68e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 83.16 E-value: 7.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 18 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA-KGLNcetgitatpcgvcdncrEIEQGRFVDLIE- 95
Cdd:PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAlKILG-----------------KSQQREYVDIIEf 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 96 -IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 174
Cdd:PRK05564 66 kPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145
|
170 180
....*....|....*....|....*.
3GLH_H 175 QFHLKALDVEQIRHQLE---HILNEE 197
Cdd:PRK05564 146 IYKLNRLSKEEIEKFISykyNDIKEE 171
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
9-245 |
1.19e-17 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 83.95 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFsGTRGVGKTSIARLLAKGLNCEtgitatpcgvcdncrei 85
Cdd:COG2256 15 LAERMRPRTLDEVVGQEHLLgpgKPLRRAIEAGRLSSMILW-GPPGTGKTTLARLIANATDAE----------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 86 eqgrFVDLieidAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHmlsRhsFN-----ALLKTLEEppEHVKFLLATT 160
Cdd:COG2256 77 ----FVAL----SAVTSGVKDIREVIEEARERRAYGRRTILFVDEIH---R--FNkaqqdALLPHVED--GTITLIGATT 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 161 D--------PqklpvtILSRCLQFHLKALDVEQIR-------HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 225
Cdd:COG2256 142 EnpsfevnsA------LLSRCRVFVLKPLSEEDLEqlleralADDERGLGGYKLELDDEALEALARLADGDARRALNALE 215
|
250 260
....*....|....*....|....
3GLH_H 226 QAIAS----GDGQVSTQAVSAMLG 245
Cdd:COG2256 216 LAVLSappdGVIEITLELVEEALQ 239
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
38-173 |
2.39e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 82.09 E-value: 2.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 38 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIdAASRTK---VEDTRDLLDNV 114
Cdd:PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL-EPIDNKdigVDQVREINEKV 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
3GLH_H 115 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 173
Cdd:PRK06871 100 SQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
38-252 |
3.49e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 81.65 E-value: 3.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 38 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD---LIEIDAASRTKVEDTRDLLDNV 114
Cdd:PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDyytLTPEKGKSSLGVDAVREVTEKL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 115 qYAPAR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHi 193
Cdd:PRK07993 101 -YEHARlGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSR- 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
3GLH_H 194 lneeHIAHEPRALQLLARAAEGSLRDALSL--TDQ-AIASGDGQVSTQAVS-----AMLGTLDDDQA 252
Cdd:PRK07993 179 ----EVTMSQDALLAALRLSAGAPGAALALlqPERwQQREALCQALAYALPsgdwlSLLPALNHEQA 241
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
12-246 |
3.61e-17 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 81.46 E-value: 3.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHaYLFSGTRGVGKTSIARLLAKGLNCETGItatpcgvcDNCREI----EQ 87
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDWR--------ENFLELnasdER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 88 GrfVDLIeidaasRTKVED---TRDLLDnvqyAPargrFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 164
Cdd:PRK00440 81 G--IDVI------RNKIKEfarTAPVGG----AP----FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 165 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTdQAIASGDGQVSTQAVSAML 244
Cdd:PRK00440 145 IIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKIT 223
|
..
3GLH_H 245 GT 246
Cdd:PRK00440 224 GT 225
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
31-254 |
1.29e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 76.77 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 31 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETgITATPCGVCDNCREIEQGRFVDLIEIDAASRTK---VEDT 107
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKsitVEQI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 108 RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 187
Cdd:PRK06090 94 RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 188 HQlehiLNEEHIAHEPRALQL--------LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 254
Cdd:PRK06090 174 QW----LKGQGITVPAYALKLnmgsplktLAMMKEGGLEKYHKLERQLVDALSGPVSDQLKCASLIAADPLTHLS 244
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
12-259 |
8.19e-15 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 75.34 E-value: 8.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 12 KWRPQTFADVVGQEHVLTAL---ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNcetgitatpcgvcdncreieqg 88
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLrewIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG---------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 89 rfVDLIEIDAA-SRTKvED----------TRDLLdnvqyapARGRfKVYLIDEVHMLS----RHSFNALLKTLEEPPEHV 153
Cdd:PRK04195 65 --WEVIELNASdQRTA-DViervageaatSGSLF-------GARR-KLILLDEVDGIHgnedRGGARAILELIKKAKQPI 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 154 kfLLATTDPQKLP-VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAlsLTD-QAIASG 231
Cdd:PRK04195 134 --ILTANDPYDPSlRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDlQAIAEG 209
|
250 260
....*....|....*....|....*...
3GLH_H 232 DGQVSTQAVSAMlgtLDDDQALSLVEAM 259
Cdd:PRK04195 210 YGKLTLEDVKTL---GRRDREESIFDAL 234
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
3-206 |
1.19e-13 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 70.79 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 3 HMSYQvlarKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLakglncetgitatpcgvcdnC 82
Cdd:PHA02544 9 FMWEQ----KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL--------------------C 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 83 REIEqgrfVDLIEIDAASrTKVEDTRDLLDNvqYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLA 158
Cdd:PHA02544 65 NEVG----AEVLFVNGSD-CRIDFVRNRLTR--FASTvslTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIIT 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 159 TTDPQKLPVTILSRCLQFHL-KALDVEQIR------HQLEHILNEEHIAHEPRAL 206
Cdd:PHA02544 138 ANNKNGIIEPLRSRCRVIDFgVPTKEEQIEmmkqmiVRCKGILEAEGVEVDMKVL 192
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
104-178 |
2.42e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 69.82 E-value: 2.42e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 104 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 178
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHI 151
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
75-176 |
1.33e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 64.08 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 75 PCGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLD--NVQYAPARGRfKVYLIDEVHMLSRHSFNALLKTLEEPPE 151
Cdd:PRK05818 39 FCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINklNRPSVESNGK-KIYIIYGIEKLNKQSANSLLKLIEEPPK 117
|
90 100
....*....|....*....|....*
3GLH_H 152 HVKFLLATTDPQKLPVTILSRCLQF 176
Cdd:PRK05818 118 NTYGIFTTRNENNILNTILSRCVQY 142
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
22-173 |
4.40e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 60.62 E-value: 4.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 22 VGQEHVLTALANGLSLGRIHHaYLFSGTRGVGKTSIARLLAKGLNcetgitatpcgvcdncreieqGRFVDLIEIDAASR 101
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELF---------------------RPGAPFLYLNASDL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 102 TKVEDTRDLLDNVQYAPARGRFK-----VYLIDEVHMLSRHSFNALLKTLEE------PPEHVKFLLATTDP--QKLPVT 168
Cdd:cd00009 59 LEGLVVAELFGHFLVRLLFELAEkakpgVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRPllGDLDRA 138
|
....*
3GLH_H 169 ILSRC 173
Cdd:cd00009 139 LYDRL 143
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
35-178 |
9.40e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 62.28 E-value: 9.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 35 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLnceTGITATPcGVCDNCRE-IEQGRFVDLIEID-AASRTK--------V 104
Cdd:PRK08769 20 LDAGRLGHGLLICGPEGLGKRAVALALAEHV---LASGPDP-AAAQRTRQlIAAGTHPDLQLVSfIPNRTGdklrteivI 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3GLH_H 105 EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC--LQFHL 178
Cdd:PRK08769 96 EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCqrLEFKL 171
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
31-196 |
2.99e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 60.51 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 31 LANGLSLGRIHHAYLFSGT-RGVGKTSIARLLAKGLNCETGitatpcGVCDNCREIEqGRFVDLIEIDaasrTKVEDTRD 109
Cdd:PRK07132 8 LDNSATQNKISHSFLLKSNyNEDIDEKILYFLNKFNNLQIT------NLNEQELPAN-IILFDIFDKD----LSKSEFLS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 110 LLDNVQYAP-ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIrh 188
Cdd:PRK07132 77 AINKLYFSSfVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKI-- 154
|
....*...
3GLH_H 189 qLEHILNE 196
Cdd:PRK07132 155 -LAKLLSK 161
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
9-235 |
6.22e-10 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 60.84 E-value: 6.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAyLFSGTRGVGKTSIARLLAKGLNCE-TGITATPCGVCDNCRE 84
Cdd:PRK13341 18 LADRLRPRTLEEFVGQDHILGEgrlLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRAHfSSLNAVLAGVKDLRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 85 IEQGRfvdlieidaaSRTKVEDTRDLLdnvqyapargrfkvyLIDEVHMLSRHSFNALLKTLEEPPehVKFLLATTDPQK 164
Cdd:PRK13341 97 VDRAK----------ERLERHGKRTIL---------------FIDEVHRFNKAQQDALLPWVENGT--ITLIGATTENPY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 165 LPV--TILSRCLQFHLKALDVEQIRHQLEHILNEEH-------IAHEPRALQLLARAAEG---SLRDALSLTDQA-IASG 231
Cdd:PRK13341 150 FEVnkALVSRSRLFRLKSLSDEDLHQLLKRALQDKErgygdrkVDLEPEAEKHLVDVANGdarSLLNALELAVEStPPDE 229
|
....
3GLH_H 232 DGQV 235
Cdd:PRK13341 230 DGLI 233
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
44-173 |
3.04e-09 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 54.52 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 44 YLFSGTRGVGKTSIARLLAKglncETGItatpcgvcdNCREIEQGRFVDLIEIDAASRtkvedTRDLLDNVQyapaRGRF 123
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAK----ELGA---------PFIEISGSELVSKYVGESEKR-----LRELFEAAK----KLAP 58
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
3GLH_H 124 KVYLIDEVHMLSRHSF-----------NALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC 173
Cdd:pfam00004 59 CVIFIDEIDALAGSRGsggdsesrrvvNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRF 122
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
12-240 |
3.36e-09 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 57.43 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHaYLFSGTRGVGKTSIARLLAKGLncetgitatpcgVCDNCREIeqgrfv 91
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHEL------------LGPNYKEA------ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 92 dLIEIDAASRTKVEDTRDLL-----DNVQYAParGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 166
Cdd:PLN03025 67 -VLELNASDDRGIDVVRNKIkmfaqKKVTLPP--GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKII 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3GLH_H 167 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSlTDQAIASGDGQVSTQAV 240
Cdd:PLN03025 144 EPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALN-NLQATHSGFGFVNQENV 216
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
123-240 |
1.19e-08 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 56.77 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 123 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 202
Cdd:PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 710
|
90 100 110
....*....|....*....|....*....|....*...
3GLH_H 203 PRALQLLARAAEGSLRDALSLTdQAIASGDGQVSTQAV 240
Cdd:PRK04132 711 EEGLQAILYIAEGDMRRAINIL-QAAAALDDKITDENV 747
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
140-226 |
5.94e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 49.65 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 140 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-------------LQFHLKALDVEQIRHQLEHILNEEHIAHEpRAL 206
Cdd:PRK08485 72 NALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLiiekrkqkkpvkpLDLDLKKLDLKDIYEFLKELEKENKLSKE-ELK 150
|
90 100
....*....|....*....|
3GLH_H 207 QLLARAAEGSLRDALSLTDQ 226
Cdd:PRK08485 151 ELIESLLKECVKYKIPLNEE 170
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
124-316 |
9.06e-07 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 49.87 E-value: 9.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 124 KVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATTDP---QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 198
Cdd:COG1466 64 RLVIVRNAEFLKKpgEGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 199 IAHEPRALQLLARAAEGSLRDALSLTDQ--AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 276
Cdd:COG1466 144 LRIDPDAAQLLAERVGGDLLALAQELEKlaLYAGDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLA 223
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
3GLH_H 277 RGIEwealLVEMLGLLHR----IAMVQLSPAALGNDMAAI-ELRM 316
Cdd:COG1466 224 EGEE----PVLILAALARqfrlLLQVKALLAQGKSLAEIAkELGV 264
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
181-242 |
5.93e-06 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 43.29 E-value: 5.93e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
3GLH_H 181 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTdQAIASGDGQVSTQAVSA 242
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDVYE 61
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
95-180 |
9.18e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 46.76 E-value: 9.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 95 EIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 171
Cdd:PRK06581 59 ETSATSNAKnisIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRS 138
|
....*....
3GLH_H 172 RCLQFHLKA 180
Cdd:PRK06581 139 RCFKINVRS 147
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
9-244 |
3.55e-05 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 45.29 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 9 LARKWRPQTFADVVGQEHVLTAL---------------ANGLSLGRihhAYLFSGTRGVGKTSIARLLAKGLNcetgita 73
Cdd:COG0464 147 ELLELREAILDDLGGLEEVKEELrelvalplkrpelreEYGLPPPR---GLLLYGPPGTGKTLLARALAGELG------- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 74 tpcgvcdncreieqgrfVDLIEIDAAS-RTK-VEDT----RDLLDNV-QYAPArgrfkVYLIDEVHML--------SRHS 138
Cdd:COG0464 217 -----------------LPLIEVDLSDlVSKyVGETeknlREVFDKArGLAPC-----VLFIDEADALagkrgevgDGVG 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 139 ---FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 214
Cdd:COG0464 275 rrvVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFdEIIFFPLPDAEERLEIFRIHLRKRPLDEDVDLEELAEATEG 354
|
250 260 270
....*....|....*....|....*....|....
3GLH_H 215 GSLRD----ALSLTDQAIASGDGQVSTQAVSAML 244
Cdd:COG0464 355 LSGADirnvVRRAALQALRLGREPVTTEDLLEAL 388
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-178 |
5.18e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.13 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 41 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATpcgvcDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 120
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----IDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
3GLH_H 121 GRFKVYLIDEVHMLSRHSFNALL--------KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 178
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
12-64 |
7.59e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.83 E-value: 7.59e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
3GLH_H 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHaYLFSGTRGVGK--TSIARLLAKG 64
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIANG 65
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
14-137 |
1.75e-04 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 41.72 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 14 RPQTFADVVGQEHVLT--------ALANGLSLGRIhhayLFSGTRGVGKTSIARLLAKGLNCETGITATPCgvcdncreI 85
Cdd:pfam05496 2 RPRTLDEYIGQEKVKEnlkifieaAKQRGEALDHV----LLYGPPGLGKTTLANIIANEMGVNIRITSGPA--------I 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
3GLH_H 86 EQGRfvDLieidAASRTKVEDtRDLLdnvqyapargrfkvyLIDEVHMLSRH 137
Cdd:pfam05496 70 ERPG--DL----AAILTNLEP-GDVL---------------FIDEIHRLNRA 99
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
14-136 |
6.69e-04 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 41.27 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 14 RPQTFADVVGQEHVL--------TALANGLSLGRIhhayLFSGTRGVGKTSIARLLAKGLNCETGITATPcgvcdncrEI 85
Cdd:PRK00080 20 RPKSLDEFIGQEKVKenlkifieAAKKRGEALDHV----LLYGPPGLGKTTLANIIANEMGVNIRITSGP--------AL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
3GLH_H 86 EQGRfvDLieidAASRTKVEDtRDLLdnvqyapargrFkvylIDEVHMLSR 136
Cdd:PRK00080 88 EKPG--DL----AAILTNLEE-GDVL-----------F----IDEIHRLSP 116
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
51-218 |
1.04e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.16 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 51 GVGKTSIARLLAKGL--NCETGITATPCGvcdNCREIEQGRFVDLiEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 128
Cdd:COG3267 53 GTGKTTLLRRLLERLpdDVKVAYIPNPQL---SPAELLRAIADEL-GLEPKGASKADLLRQLQEFLLELAAAGRRVVLII 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 129 DEVHMLSRHSFnallktleeppEHVKFLLA-TTDPQKLPVTIL-------------------SRC-LQFHLKALDVEQ-- 185
Cdd:COG3267 129 DEAQNLPPETL-----------EELRLLSNlETDSRKLLQIVLvgqpelrerlarpelrqlrQRItARYHLRPLDREEta 197
|
170 180 190
....*....|....*....|....*....|....*
3GLH_H 186 --IRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 218
Cdd:COG3267 198 ayIEHRLKVAGGEGDPLFTPEAIEAIYRASGGIPR 232
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
14-75 |
2.28e-03 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 39.68 E-value: 2.28e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 14 RPQTFADVVGQEHVL--------TALANGLSLGRIhhayLFSGTRGVGKTSIARLLAKGLNCETGITATP 75
Cdd:COG2255 23 RPKRLDEYIGQEKVKenlkifieAAKKRGEALDHV----LLYGPPGLGKTTLAHIIANEMGVNIRITSGP 88
|
|
| Fap7 |
COG1936 |
Broad-specificity NMP kinase [Nucleotide transport and metabolism]; |
47-68 |
4.27e-03 |
|
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
Pssm-ID: 441539 [Multi-domain] Cd Length: 173 Bit Score: 37.87 E-value: 4.27e-03
10 20
....*....|....*....|..
3GLH_H 47 SGTRGVGKTSIARLLAKGLNCE 68
Cdd:COG1936 6 TGTPGTGKTTVAKLLAERLGLE 27
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
125-233 |
4.30e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 38.80 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 125 VYLIDEVHMLSRHSFNALLKTLEEppEHVKFL-LAT---------TD---PQKLPVTILSRCLQFHLKALDVEQIRHQLE 191
Cdd:COG1224 295 VLFIDDAHMLDIEAFSFLTRAMES--ELAPIIiLATnrgitkirgTDiesPHGIPLDLLDRLLIIPTRPYTEDEIREIIK 372
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
3GLH_H 192 HILNEEHIAHEPRALQLLAR-AAEGSLRDALSLTDQA--IASGDG 233
Cdd:COG1224 373 IRAEEEDIELSDDALEELTKiGVERSLRYAVQLLEPAyiIAKRRG 417
|
|
| DNA_pol3_delta |
pfam06144 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
142-222 |
5.10e-03 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 428788 [Multi-domain] Cd Length: 174 Bit Score: 37.65 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 142 LLKTLEEPPEHVKFLLATTDP----QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 217
Cdd:pfam06144 83 LEEYLSNPPPDSLLILFAPGKlderKKLTKLLKKKATVVECFTLKEEELIQWIQSRAQELGLQIEPEAIELLCELVENNL 162
|
....*
3GLH_H 218 RDALS 222
Cdd:pfam06144 163 SALAQ 167
|
|
| AAA_18 |
pfam13238 |
AAA domain; |
45-132 |
6.20e-03 |
|
AAA domain;
Pssm-ID: 433052 [Multi-domain] Cd Length: 128 Bit Score: 36.64 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3GLH_H 45 LFSGTRGVGKTSIARLLAKGLNCEtgitatpcgvcDNCREIEQGRFVDLIEIDAASRTKVEDTRD---LLDNVQYAPARG 121
Cdd:pfam13238 2 LITGTPGVGKTTLAKELSKRLGFG-----------DNVRDLALENGLVLGDDPETRESKRLDEDKldrLLDLLEENAALE 70
|
90
....*....|.
3GLH_H 122 RFKVYLIDEVH 132
Cdd:pfam13238 71 EGGNLIIDGHL 81
|
|
| |
