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Conserved domains on  [gi|261278838|pdb|3JPU|C]
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Chain C, Transcriptional activator protein lasR

Protein Classification

autoinducer binding domain-containing protein( domain architecture ID 10507062)

autoinducer binding domain-containing protein similar to Pseudomonas aeruginosa transcriptional Activator Protein Lasr

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Autoind_bind pfam03472
Autoinducer binding domain; This domain is found a a large family of transcriptional ...
 18-161 8.55e-38

Autoinducer binding domain; This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


:

Pssm-ID: 427319  Cd Length: 148  Bit Score: 126.71  E-value: 8.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3JPU_C         18 EWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQT-- 95
Cdd:pfam03472   4 ELFDALARLAAALGFDHFAYGARAPLGLSAPDVLVLSNYPAEWLDRYDEANYFAIDPVVRHARRSSSPFSWSDVLFAEar 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3JPU_C         96 RKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMesVLPTLWMLKDYALQS 161
Cdd:pfam03472  84 GAERRFLDEARDFGLRDGYTVPVHGPGGRLGALSFAGPGEDLDPAEAIE--AAARLQLLAIYAHLR 147
 
Name Accession Description Interval E-value
Autoind_bind pfam03472
Autoinducer binding domain; This domain is found a a large family of transcriptional ...
 18-161 8.55e-38

Autoinducer binding domain; This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 427319  Cd Length: 148  Bit Score: 126.71  E-value: 8.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3JPU_C         18 EWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQT-- 95
Cdd:pfam03472   4 ELFDALARLAAALGFDHFAYGARAPLGLSAPDVLVLSNYPAEWLDRYDEANYFAIDPVVRHARRSSSPFSWSDVLFAEar 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3JPU_C         96 RKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMesVLPTLWMLKDYALQS 161
Cdd:pfam03472  84 GAERRFLDEARDFGLRDGYTVPVHGPGGRLGALSFAGPGEDLDPAEAIE--AAARLQLLAIYAHLR 147
PRK10188 PRK10188
transcriptional regulator SdiA;
55-131 3.19e-03

transcriptional regulator SdiA;


Pssm-ID: 182292 [Multi-domain]  Cd Length: 240  Bit Score: 36.69  E-value: 3.19e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3JPU_C        55 NYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYqtRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLS 131
Cdd:PRK10188  62 TYPEAWVSHYQAENYFAIDPVLKPENFSQGHLMWNDDLF--SEAQALWDAARAHGLRRGVTQCLMLPNRALGFLSFS 136
 
Name Accession Description Interval E-value
Autoind_bind pfam03472
Autoinducer binding domain; This domain is found a a large family of transcriptional ...
 18-161 8.55e-38

Autoinducer binding domain; This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 427319  Cd Length: 148  Bit Score: 126.71  E-value: 8.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3JPU_C         18 EWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQT-- 95
Cdd:pfam03472   4 ELFDALARLAAALGFDHFAYGARAPLGLSAPDVLVLSNYPAEWLDRYDEANYFAIDPVVRHARRSSSPFSWSDVLFAEar 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3JPU_C         96 RKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMesVLPTLWMLKDYALQS 161
Cdd:pfam03472  84 GAERRFLDEARDFGLRDGYTVPVHGPGGRLGALSFAGPGEDLDPAEAIE--AAARLQLLAIYAHLR 147
PRK10188 PRK10188
transcriptional regulator SdiA;
55-131 3.19e-03

transcriptional regulator SdiA;


Pssm-ID: 182292 [Multi-domain]  Cd Length: 240  Bit Score: 36.69  E-value: 3.19e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3JPU_C        55 NYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYqtRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLS 131
Cdd:PRK10188  62 TYPEAWVSHYQAENYFAIDPVLKPENFSQGHLMWNDDLF--SEAQALWDAARAHGLRRGVTQCLMLPNRALGFLSFS 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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