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Conserved domains on  [gi|1285033963|pdb|4R1K|A]
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Chain A, Uncharacterized protein

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5104 super family cl25341
Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.
 15-122 1.39e-05

Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.


The actual alignment was detected with superfamily member pfam17117:

Pssm-ID: 465354  Cd Length: 108  Bit Score: 41.53  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4R1K_A         15 ECIVNKDSEKLFDFYNKD*KDNYKDssLDE-IRQLFEYIDGAITSYNYEGKGGGqEAKNDGIICYYSCHPEFDFTTETGQ 93
Cdd:pfam17117   4 EALENKDKEGLKSLFSKNALKESND--IDEgIDALFDFFQGEIVSYEELGGSSD-SSSESGKNRTYFLRAIYSIKTDKGK 80

                          90       100
                  ....*....|....*....|....*....
4R1K_A         94 eYTISFSYHYIWNEHPEYEGIN*IQICKD 122
Cdd:pfam17117  81 -YYIFFIYCLVDEKNPDNVGIYYIIISKK 108
 
Name Accession Description Interval E-value
DUF5104 pfam17117
Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.
 15-122 1.39e-05

Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.


Pssm-ID: 465354  Cd Length: 108  Bit Score: 41.53  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4R1K_A         15 ECIVNKDSEKLFDFYNKD*KDNYKDssLDE-IRQLFEYIDGAITSYNYEGKGGGqEAKNDGIICYYSCHPEFDFTTETGQ 93
Cdd:pfam17117   4 EALENKDKEGLKSLFSKNALKESND--IDEgIDALFDFFQGEIVSYEELGGSSD-SSSESGKNRTYFLRAIYSIKTDKGK 80

                          90       100
                  ....*....|....*....|....*....
4R1K_A         94 eYTISFSYHYIWNEHPEYEGIN*IQICKD 122
Cdd:pfam17117  81 -YYIFFIYCLVDEKNPDNVGIYYIIISKK 108
 
Name Accession Description Interval E-value
DUF5104 pfam17117
Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.
 15-122 1.39e-05

Domain of unknown function (DUF5104); This is a family of gut microbes of unknown function.


Pssm-ID: 465354  Cd Length: 108  Bit Score: 41.53  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4R1K_A         15 ECIVNKDSEKLFDFYNKD*KDNYKDssLDE-IRQLFEYIDGAITSYNYEGKGGGqEAKNDGIICYYSCHPEFDFTTETGQ 93
Cdd:pfam17117   4 EALENKDKEGLKSLFSKNALKESND--IDEgIDALFDFFQGEIVSYEELGGSSD-SSSESGKNRTYFLRAIYSIKTDKGK 80

                          90       100
                  ....*....|....*....|....*....
4R1K_A         94 eYTISFSYHYIWNEHPEYEGIN*IQICKD 122
Cdd:pfam17117  81 -YYIFFIYCLVDEKNPDNVGIYYIIISKK 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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