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Conserved domains on  [gi|940376616|pdb|5ANB|C]
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Chain C, 60S ACIDIC RIBOSOMAL PROTEIN P0

Protein Classification

uL10 family ribosomal protein( domain architecture ID 2031)

uL10 family ribosomal protein forms a tight complex with multiple copies of the small acidic protein; the complex forms a stalk structure on the large subunit of the ribosome

Gene Ontology:  GO:0070180|GO:0003735|GO:0002181
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L10_P0 super family cl00376
Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in ...
 1-205 2.29e-111

Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


The actual alignment was detected with superfamily member PTZ00135:

Pssm-ID: 469747 [Multi-domain]  Cd Length: 310  Bit Score: 320.81  E-value: 2.29e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         1 MSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY 80
Cdd:PTZ00135   2 AKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        81 LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHII 160
Cdd:PTZ00135  82 VKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLI 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
5ANB_C       161 KTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSP---SISEE 205
Cdd:PTZ00135 162 KEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAkvlDITDE 209
 
Name Accession Description Interval E-value
PTZ00135 PTZ00135
60S acidic ribosomal protein P0; Provisional
 1-205 2.29e-111

60S acidic ribosomal protein P0; Provisional


Pssm-ID: 240285 [Multi-domain]  Cd Length: 310  Bit Score: 320.81  E-value: 2.29e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         1 MSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY 80
Cdd:PTZ00135   2 AKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        81 LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHII 160
Cdd:PTZ00135  82 VKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLI 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
5ANB_C       161 KTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSP---SISEE 205
Cdd:PTZ00135 162 KEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAkvlDITDE 209
Ribosomal_P0_L10e cd05795
Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal ...
 8-181 4.93e-85

Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240221 [Multi-domain]  Cd Length: 175  Bit Score: 249.03  E-value: 4.93e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        8 RKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCI 87
Cdd:cd05795   2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGF 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C       88 IFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVG 167
Cdd:cd05795  82 IFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVG 161

                       170
                ....*....|....
5ANB_C      168 ASEATLLQKLNIKP 181
Cdd:cd05795 162 ASEATLLNKLNIKP 175
RL10P_insert pfam17777
Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and ...
 110-179 1.48e-20

Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and archaeal ribosomal L10 protein.


Pssm-ID: 465500 [Multi-domain]  Cd Length: 71  Bit Score: 81.10  E-value: 1.48e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5ANB_C        110 AKAGVFAPNDVIIPAGPTGMEPTQT-SFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNI 179
Cdd:pfam17777   1 ARAGAIATEDVVLPAGPTGLAPGPIePQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLLGI 71
RplJ COG0244
Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 ...
 9-101 1.71e-03

Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440014  Cd Length: 172  Bit Score: 37.74  E-value: 1.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        9 KNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLM-GKKTMIRKVIRDLadskpELDALNTYLKQNTCI 87
Cdd:COG0244   6 KKAVVAELKEKLKEAQAVVLTDYRGLTVAQMTELRRKLREAGVEYKvVKNTLARIALEGT-----GFEGLDDLLKGPTAI 80

                        90
                ....*....|....
5ANB_C       88 IFCKDNIAEVKRVI 101
Cdd:COG0244  81 AFSYEDPVAAAKVL 94
 
Name Accession Description Interval E-value
PTZ00135 PTZ00135
60S acidic ribosomal protein P0; Provisional
 1-205 2.29e-111

60S acidic ribosomal protein P0; Provisional


Pssm-ID: 240285 [Multi-domain]  Cd Length: 310  Bit Score: 320.81  E-value: 2.29e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         1 MSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY 80
Cdd:PTZ00135   2 AKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        81 LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHII 160
Cdd:PTZ00135  82 VKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLI 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
5ANB_C       161 KTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSP---SISEE 205
Cdd:PTZ00135 162 KEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAkvlDITDE 209
Ribosomal_P0_L10e cd05795
Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal ...
 8-181 4.93e-85

Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240221 [Multi-domain]  Cd Length: 175  Bit Score: 249.03  E-value: 4.93e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        8 RKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCI 87
Cdd:cd05795   2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGF 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C       88 IFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVG 167
Cdd:cd05795  82 IFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVG 161

                       170
                ....*....|....
5ANB_C      168 ASEATLLQKLNIKP 181
Cdd:cd05795 162 ASEATLLNKLNIKP 175
PTZ00240 PTZ00240
60S ribosomal protein P0; Provisional
 6-199 1.60e-51

60S ribosomal protein P0; Provisional


Pssm-ID: 140267 [Multi-domain]  Cd Length: 323  Bit Score: 168.60  E-value: 1.60e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQ-- 83
Cdd:PTZ00240   5 TTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQce 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        84 -------NTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNE 156
Cdd:PTZ00240  85 eknllsgNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTE 164

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
5ANB_C       157 VHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYS 199
Cdd:PTZ00240 165 KKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFT 207
rplP0 PRK04019
acidic ribosomal protein P0; Validated
 7-205 3.74e-38

acidic ribosomal protein P0; Validated


Pssm-ID: 179712 [Multi-domain]  Cd Length: 330  Bit Score: 134.22  E-value: 3.74e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         7 KRKNVFIEKATKLFTTYDkmIVAEADFVG--SSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADskPELDALNTYLKQN 84
Cdd:PRK04019   6 EWKKEEVEELKELIKSYP--VVGIVDLEGipARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE--EDLEKLEDYLEGQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        85 TCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQ-TSFLQDLKIATKINRGQIDIVNEVHIIKTG 163
Cdd:PRK04019  82 VALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPiLSELQKLGIPARIQKGKIVIKKDTVVAKAG 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
5ANB_C       164 QKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSP---SISEE 205
Cdd:PRK04019 162 EVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPevlAIDEE 206
Ribosomal_L10_P0 cd00379
Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in ...
 7-161 1.64e-25

Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 238222 [Multi-domain]  Cd Length: 155  Bit Score: 96.48  E-value: 1.64e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        7 KRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVL-MGKKTMIRKVIRDLadskpELDALNTYLKQNT 85
Cdd:cd00379   1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLkVGKNTLMRRALKGT-----GFEELKPLLKGPT 75

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
5ANB_C       86 CIIFCKDNIAEVKRVINTQRVG---APAKAGVFApNDVIIPAGPTGMEPTQTsflQDLKIATKINRGQIDIVNEVHIIK 161
Cdd:cd00379  76 ALAFTNEDPVEVAKVLKDFAKEnkkLFAKGGVVA-GKVLDPAGVTALAKLPS---REELLAMLIGLLKAPIAKLARLLN 150
RL10P_insert pfam17777
Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and ...
 110-179 1.48e-20

Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and archaeal ribosomal L10 protein.


Pssm-ID: 465500 [Multi-domain]  Cd Length: 71  Bit Score: 81.10  E-value: 1.48e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5ANB_C        110 AKAGVFAPNDVIIPAGPTGMEPTQT-SFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNI 179
Cdd:pfam17777   1 ARAGAIATEDVVLPAGPTGLAPGPIePQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLLGI 71
Ribosomal_L10 pfam00466
Ribosomal protein L10;
7-102 2.78e-16

Ribosomal protein L10;


Pssm-ID: 459822 [Multi-domain]  Cd Length: 99  Bit Score: 71.03  E-value: 2.78e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C          7 KRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVL-MGKKTMIRKVIRDLadskpELDALNTYLKQNT 85
Cdd:pfam00466   4 EKKEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELkVGKNTLMRRALEET-----GEEKLEDYLKGPT 78

                          90
                  ....*....|....*..
5ANB_C         86 CIIFCKDNIAEVKRVIN 102
Cdd:pfam00466  79 ALLFTNEDPVAVAKVLE 95
Ribosomal_P0_like cd05796
Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized ...
 7-166 1.41e-09

Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240222 [Multi-domain]  Cd Length: 163  Bit Score: 54.51  E-value: 1.41e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        7 KRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGiGAVLMGKKTMIRKVI-RDLAD-SKPELDALNTYLKQN 84
Cdd:cd05796   1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD-SRFFFGKNKVMQVALgRTPEDeYKPNLHKLSKYLKGQ 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C       85 TCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPT-----GMEPTqtsfLQDLKIATKINRGQIDIVNEVHI 159
Cdd:cd05796  80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLeqfphSMEPQ----LRKLGLPTKLKKGVITLEADYVV 155


                ....*..
5ANB_C      160 IKTGQKV 166
Cdd:cd05796 156 CEEGKVL 162
rplJ PRK00099
50S ribosomal protein L10; Reviewed
 7-102 7.56e-04

50S ribosomal protein L10; Reviewed


Pssm-ID: 234632  Cd Length: 172  Bit Score: 38.58  E-value: 7.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C         7 KRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLM-GKKTMIRKVIRDLadskpELDALNTYLKQNT 85
Cdd:PRK00099   4 EEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKvVKNTLARRALEGT-----GFEGLDDLLKGPT 78

                         90
                 ....*....|....*..
5ANB_C        86 CIIFCKDNIAEVKRVIN 102
Cdd:PRK00099  79 AIAFSYEDPVAAAKVLK 95
RplJ COG0244
Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 ...
 9-101 1.71e-03

Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440014  Cd Length: 172  Bit Score: 37.74  E-value: 1.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ANB_C        9 KNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLM-GKKTMIRKVIRDLadskpELDALNTYLKQNTCI 87
Cdd:COG0244   6 KKAVVAELKEKLKEAQAVVLTDYRGLTVAQMTELRRKLREAGVEYKvVKNTLARIALEGT-----GFEGLDDLLKGPTAI 80

                        90
                ....*....|....
5ANB_C       88 IFCKDNIAEVKRVI 101
Cdd:COG0244  81 AFSYEDPVAAAKVL 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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