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Conserved domains on  [gi|1048348031|pdb|5IC9|C]
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Chain C, Structure of the CTD complex of Utp12 and Utp13

Protein Classification

Utp12 domain-containing protein( domain architecture ID 10512682)

Utp12 domain-containing protein similar to Schizosaccharomyces pombe uncharacterized protein C1450.03; lacks the WD repeats found at the N-terminus of other UTP5 family members such as Saccharomyces cerevisiae DIP2/UTP12

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 79-180 1.59e-28

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


:

Pssm-ID: 461125  Cd Length: 106  Bit Score: 103.01  E-value: 1.59e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5IC9_C         79 AETYVLNT-LQKIKPASLHDALLVLPFSTIPSLLTFLN-LFAQRELNVPLTCRILFFVLKTHHKQIVASRTMRATLEKVR 156
Cdd:pfam04003   1 NDEYLLESvLEKIPPSDIELTLLRLPFSYVLRLLKFLAeRLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
5IC9_C        157 ANLRAALRRQKDEMGFNIAALKVV 180
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGALDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 79-180 1.59e-28

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 103.01  E-value: 1.59e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5IC9_C         79 AETYVLNT-LQKIKPASLHDALLVLPFSTIPSLLTFLN-LFAQRELNVPLTCRILFFVLKTHHKQIVASRTMRATLEKVR 156
Cdd:pfam04003   1 NDEYLLESvLEKIPPSDIELTLLRLPFSYVLRLLKFLAeRLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
5IC9_C        157 ANLRAALRRQKDEMGFNIAALKVV 180
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGALDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 79-180 1.59e-28

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 103.01  E-value: 1.59e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5IC9_C         79 AETYVLNT-LQKIKPASLHDALLVLPFSTIPSLLTFLN-LFAQRELNVPLTCRILFFVLKTHHKQIVASRTMRATLEKVR 156
Cdd:pfam04003   1 NDEYLLESvLEKIPPSDIELTLLRLPFSYVLRLLKFLAeRLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
5IC9_C        157 ANLRAALRRQKDEMGFNIAALKVV 180
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGALDYL 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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