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Conserved domains on  [gi|1270517065|pdb|5XCV|E]
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List of domain hits

Name Accession Description Interval E-value
IgV_L_lambda cd04984
Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of ...
7-112 2.00e-53

Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


:

Pssm-ID: 409373  Cd Length: 105  Bit Score: 164.56  E-value: 2.00e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        7 VLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIdrSSNSALLTINNVQ 86
Cdd:cd04984   1 VLTQPSSLSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDKHRPSGIPDRFSGSK--SGNTASLTISGAQ 78
                        90       100
                ....*....|....*....|....*..
5XCV_E       87 TEDEADYFCHS-YSSGIVFGGGTKLTV 112
Cdd:cd04984  79 TEDEADYYCQVwDSNSYVFGGGTKLTV 105
SARAH_MST1 cd21887
C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called ...
117-165 8.07e-32

C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called serine/threonine-protein kinase 4, MST-1, STE20-like kinase MST1, or serine/threonine-protein kinase (STK) Krs-2, is a STE20 family stress-activated, pro-apoptotic STK which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. It is a key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain, which mediates homodimerization of MST1. The MST1 SARAH domain also interacts with Rassf1 and Rassf5 by forming a heterodimer which mediates the apoptosis process.


:

Pssm-ID: 439181  Cd Length: 49  Bit Score: 108.07  E-value: 8.07e-32
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
5XCV_E      117 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21887   1 DYEFLKSWSVEELQRRLASLDPMMEQEIEEIRQKYQSKRQPILDAIEAK 49
 
Name Accession Description Interval E-value
IgV_L_lambda cd04984
Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of ...
7-112 2.00e-53

Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409373  Cd Length: 105  Bit Score: 164.56  E-value: 2.00e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        7 VLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIdrSSNSALLTINNVQ 86
Cdd:cd04984   1 VLTQPSSLSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDKHRPSGIPDRFSGSK--SGNTASLTISGAQ 78
                        90       100
                ....*....|....*....|....*..
5XCV_E       87 TEDEADYFCHS-YSSGIVFGGGTKLTV 112
Cdd:cd04984  79 TEDEADYYCQVwDSNSYVFGGGTKLTV 105
SARAH_MST1 cd21887
C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called ...
117-165 8.07e-32

C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called serine/threonine-protein kinase 4, MST-1, STE20-like kinase MST1, or serine/threonine-protein kinase (STK) Krs-2, is a STE20 family stress-activated, pro-apoptotic STK which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. It is a key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain, which mediates homodimerization of MST1. The MST1 SARAH domain also interacts with Rassf1 and Rassf5 by forming a heterodimer which mediates the apoptosis process.


Pssm-ID: 439181  Cd Length: 49  Bit Score: 108.07  E-value: 8.07e-32
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
5XCV_E      117 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21887   1 DYEFLKSWSVEELQRRLASLDPMMEQEIEEIRQKYQSKRQPILDAIEAK 49
Mst1_SARAH pfam11629
C terminal SARAH domain of Mst1; This family of proteins represents the C terminal SARAH ...
118-165 6.40e-31

C terminal SARAH domain of Mst1; This family of proteins represents the C terminal SARAH domain of Mst1. SARAH controls apoptosis and cell cycle arrest via the Ras, RASSF, MST pathway. The Mst1 SARAH domain interacts with Rassf1 and Rassf5 by forming a heterodimer which mediates the apoptosis process.


Pssm-ID: 463314  Cd Length: 48  Bit Score: 105.81  E-value: 6.40e-31
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
5XCV_E        118 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:pfam11629   1 FEFLKFLSVDELQQRLANLDPEMEREIEELRKRYQAKRQPILDAIDAK 48
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
9-113 1.79e-23

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 88.67  E-value: 1.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E          9 TQPNSVSTNLGSTVKLSCK-RSTGNIGSNYVNWYQQHEGRSPTTMI--YRDDKRPDGVPDRFSGSIDRSSNSALLTINNV 85
Cdd:pfam07686   1 QTPREVTVALGGSVTLPCTySSSMSEASTSVYWYRQPPGKGPTFLIayYSNGSEEGVKKGRFSGRGDPSNGDGSLTIQNL 80
                          90       100
                  ....*....|....*....|....*....
5XCV_E         86 QTEDEADYFCHSYSSGI-VFGGGTKLTVL 113
Cdd:pfam07686  81 TLSDSGTYTCAVIPSGEgVFGKGTRLTVL 109
IGv smart00406
Immunoglobulin V-Type;
21-95 9.13e-20

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 78.19  E-value: 9.13e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
5XCV_E          21 TVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKR----PDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFC 95
Cdd:smart00406   1 SVTLSCKFSGSTFSSYYVSWVRQPPGKGLEWLGYIGSNGssyyQESYKGRFTISKDTSKNDVSLTISNLRVEDTGTYYC 79
 
Name Accession Description Interval E-value
IgV_L_lambda cd04984
Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of ...
7-112 2.00e-53

Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409373  Cd Length: 105  Bit Score: 164.56  E-value: 2.00e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        7 VLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIdrSSNSALLTINNVQ 86
Cdd:cd04984   1 VLTQPSSLSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDKHRPSGIPDRFSGSK--SGNTASLTISGAQ 78
                        90       100
                ....*....|....*....|....*..
5XCV_E       87 TEDEADYFCHS-YSSGIVFGGGTKLTV 112
Cdd:cd04984  79 TEDEADYYCQVwDSNSYVFGGGTKLTV 105
SARAH_MST1 cd21887
C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called ...
117-165 8.07e-32

C-terminal SARAH domain of mammalian STE20-like protein kinase 1 (MST1); MST1, also called serine/threonine-protein kinase 4, MST-1, STE20-like kinase MST1, or serine/threonine-protein kinase (STK) Krs-2, is a STE20 family stress-activated, pro-apoptotic STK which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. It is a key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain, which mediates homodimerization of MST1. The MST1 SARAH domain also interacts with Rassf1 and Rassf5 by forming a heterodimer which mediates the apoptosis process.


Pssm-ID: 439181  Cd Length: 49  Bit Score: 108.07  E-value: 8.07e-32
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
5XCV_E      117 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21887   1 DYEFLKSWSVEELQRRLASLDPMMEQEIEEIRQKYQSKRQPILDAIEAK 49
Mst1_SARAH pfam11629
C terminal SARAH domain of Mst1; This family of proteins represents the C terminal SARAH ...
118-165 6.40e-31

C terminal SARAH domain of Mst1; This family of proteins represents the C terminal SARAH domain of Mst1. SARAH controls apoptosis and cell cycle arrest via the Ras, RASSF, MST pathway. The Mst1 SARAH domain interacts with Rassf1 and Rassf5 by forming a heterodimer which mediates the apoptosis process.


Pssm-ID: 463314  Cd Length: 48  Bit Score: 105.81  E-value: 6.40e-31
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
5XCV_E        118 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:pfam11629   1 FEFLKFLSVDELQQRLANLDPEMEREIEELRKRYQAKRQPILDAIDAK 48
IgV_L_kappa cd04980
Immunoglobulin (Ig) light chain, kappa type, variable (V) domain; The members here are ...
7-112 7.38e-31

Immunoglobulin (Ig) light chain, kappa type, variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, kappa type, variable (V) domain. This group contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.


Pssm-ID: 409369  Cd Length: 106  Bit Score: 107.48  E-value: 7.38e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        7 VLTQ-PNSVSTNLGSTVKLSCKRSTgNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSidRSSNSALLTINNV 85
Cdd:cd04980   2 VMTQsPASLSVSPGERVTISCKASQ-SISSNYLAWYQQKPGQAPKLLIYYASTLHSGVPSRFSGS--GSGTDFTLTISSV 78
                        90       100
                ....*....|....*....|....*...
5XCV_E       86 QTEDEADYFC-HSYSSGIVFGGGTKLTV 112
Cdd:cd04980  79 EPEDAAVYYCqQGYTFPYTFGGGTKLEI 106
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
8-112 4.94e-30

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 105.49  E-value: 4.94e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        8 LTQ-PNSVSTNLGSTVKLSCKRSTGnIGSNYVNWYQQHEGRSPTTMIYRD---DKRPDGVPDRFSGSIDrSSNSALLTIN 83
Cdd:cd00099   1 VTQsPRSLSVQEGESVTLSCEVSSS-FSSTYIYWYRQKPGQGPEFLIYLSsskGKTKGGVPGRFSGSRD-GTSSFSLTIS 78
                        90       100       110
                ....*....|....*....|....*....|...
5XCV_E       84 NVQTEDEADYFCHSYSSG----IVFGGGTKLTV 112
Cdd:cd00099  79 NLQPEDSGTYYCAVSESGgtdkLTFGSGTRLTV 111
SARAH_MST_Hpo cd21884
C-terminal SARAH domain found in the mammalian STE20-like protein kinase (MST) subfamily; The ...
118-165 3.38e-27

C-terminal SARAH domain found in the mammalian STE20-like protein kinase (MST) subfamily; The MST subfamily includes MST1 and MST2, as well as Drosophila melanogaster homolog protein, Hippo (Hpo). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 and MST2 are STE20 family stress-activated, pro-apoptotic serine/threonine-protein kinases which, following caspase-cleavage, enter the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. They are key components of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. Hpo, also called STE20-like kinase MST (dMST), is the Drosophila homolog of STE20-like protein kinases, MST1 and MST2. It is a STE20 family serine/threonine-protein kinase that functions as a tumor suppressor by restricting cell proliferation, and promotes apoptosis in conjunction with salvador and warts. Hpo plays a key role in the Hippo/SWH (Sav/Wts/Hpo) signaling pathway. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain of mammalian STE20-like protein kinases and the Drosophila melanogaster homolog Hippo.


Pssm-ID: 439178  Cd Length: 48  Bit Score: 96.53  E-value: 3.38e-27
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
5XCV_E      118 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21884   1 FEFLKSLSYEELQERLALLDPEMEREIEELRKRYQAKRQPILDAIEAK 48
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
9-113 1.79e-23

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 88.67  E-value: 1.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E          9 TQPNSVSTNLGSTVKLSCK-RSTGNIGSNYVNWYQQHEGRSPTTMI--YRDDKRPDGVPDRFSGSIDRSSNSALLTINNV 85
Cdd:pfam07686   1 QTPREVTVALGGSVTLPCTySSSMSEASTSVYWYRQPPGKGPTFLIayYSNGSEEGVKKGRFSGRGDPSNGDGSLTIQNL 80
                          90       100
                  ....*....|....*....|....*....
5XCV_E         86 QTEDEADYFCHSYSSGI-VFGGGTKLTVL 113
Cdd:pfam07686  81 TLSDSGTYTCAVIPSGEgVFGKGTRLTVL 109
IgV_TCR_alpha cd04983
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar ...
9-112 3.87e-23

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins; The members here are composed of the immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409372 [Multi-domain]  Cd Length: 109  Bit Score: 87.71  E-value: 3.87e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        9 TQ-PNSVSTNLGSTVKLSCKRSTgnIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQT 87
Cdd:cd04983   2 TQsPQSLSVQEGENVTLNCNYST--STFYYLFWYRQYPGQGPQFLIYISSDSGNKKKGRFSATLDKSRKSSSLHISAAQL 79
                        90       100
                ....*....|....*....|....*....
5XCV_E       88 EDEADYFC---HSYSSG-IVFGGGTKLTV 112
Cdd:cd04983  80 SDSAVYFCalsESGGTGkLTFGKGTRLTV 108
SARAH_MST2 cd21888
C-terminal SARAH domain of mammalian STE20-like protein kinase 2 (MST2); MST2, also called ...
117-165 2.27e-22

C-terminal SARAH domain of mammalian STE20-like protein kinase 2 (MST2); MST2, also called serine/threonine-protein kinase 3, MST-2, STE20-like kinase MST2, or serine/threonine-protein kinase (STK) Krs-1, is a STE20 family stress-activated, pro-apoptotic STK which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. It is a key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain, which mediates homodimerization of MST2. Similar to MST1, MST2 may also form heterodimers with other SARAH domain-containing proteins.


Pssm-ID: 439182  Cd Length: 49  Bit Score: 84.27  E-value: 2.27e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
5XCV_E      117 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21888   1 DFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK 49
IGv smart00406
Immunoglobulin V-Type;
21-95 9.13e-20

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 78.19  E-value: 9.13e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
5XCV_E          21 TVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKR----PDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFC 95
Cdd:smart00406   1 SVTLSCKFSGSTFSSYYVSWVRQPPGKGLEWLGYIGSNGssyyQESYKGRFTISKDTSKNDVSLTISNLRVEDTGTYYC 79
SARAH_Hpo cd21889
C-terminal SARAH domain of Drosophila melanogaster protein Hippo (Hpo) and similar proteins; ...
116-165 1.33e-18

C-terminal SARAH domain of Drosophila melanogaster protein Hippo (Hpo) and similar proteins; Hpo, also called STE20-like kinase MST (dMST), is the Drosophila homolog of STE20-like protein kinases, MST1 and MST2. It is a STE20 family serine/threonine-protein kinase that functions as a tumor suppressor by restricting cell proliferation, and promotes apoptosis in conjunction with salvador and warts. Hpo plays a key role in the Hippo/SWH (Sav/Wts/Hpo) signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. This model corresponds to the C-terminal SARAH (Salvador-RassF-Hippo) domain of Hpo, which mediates complex formation between Hpo and Sav, as well as homodimerization.


Pssm-ID: 439183  Cd Length: 56  Bit Score: 74.51  E-value: 1.33e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
5XCV_E      116 SDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK 165
Cdd:cd21889   1 GEFDFLKFLTYDDLNQRLANIDSEMEREIEELNKRYHAKRQPILDAMDAK 50
IgV_TCR_gamma cd04982
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain; The members here ...
8-112 1.18e-17

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigens as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain the standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409371  Cd Length: 117  Bit Score: 73.94  E-value: 1.18e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        8 LTQPN-SVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIY-----RDDKRPDGVPDRFSGSIDRSSNSALLT 81
Cdd:cd04982   1 LEQPQlSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYvsstsAVRKDSGKTKNKFEARKDVGKSTSTLT 80
                        90       100       110
                ....*....|....*....|....*....|....*.
5XCV_E       82 INNVQTEDEADYFCHSYSSGI-----VFGGGTKLTV 112
Cdd:cd04982  81 ITNLEKEDSATYYCAYWESGSgyyikVFGSGTKLIV 116
IgV_TCR_gammadelta cd20988
Gammadelta T-cell antigen receptor, variable (V) domain; The members here are composed of the ...
10-112 8.69e-16

Gammadelta T-cell antigen receptor, variable (V) domain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409580  Cd Length: 114  Bit Score: 69.12  E-value: 8.69e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       10 QPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGrSPTTMIYRD-DKRPDGVPDRFSGSIDRSSNSALLTINNVQTE 88
Cdd:cd20988   4 EHQTVTVSVGKPVTLKCSMKGEAISNYYINWYRKTQG-NTMTFIYREgGIYGPGFKDNFRGDIDSSNNLAVLKILEASER 82
                        90       100       110
                ....*....|....*....|....*....|.
5XCV_E       89 DEADYFCHSYSSG-------IVFGGGTKLTV 112
Cdd:cd20988  83 DEGSYYCASDTPGggreydpLIFGKGTYLTV 113
IgV_TCR_beta cd05899
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) beta chain; The members here ...
8-112 2.01e-15

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) beta chain; The members here are composed of the immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409480  Cd Length: 110  Bit Score: 68.08  E-value: 2.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        8 LTQ-PNSVSTNLGSTVKLSCKRstgNIGSNYVNWYQQHEGRSPTTMIY---RDDKRPDGVP-DRFSGSIDRSSNSALlTI 82
Cdd:cd05899   1 VTQsPRYLIKRRGQSVTLRCSQ---KSGHDNMYWYRQDPGKGLQLLFYsygGGLNEEGDLPgDRFSASRPSLTRSSL-TI 76
                        90       100       110
                ....*....|....*....|....*....|....*
5XCV_E       83 NNVQTEDEADYFCHSySSGI-----VFGGGTKLTV 112
Cdd:cd05899  77 KSAEPEDSAVYLCAS-SLGGgadeaYFGPGTRLTV 110
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
11-112 4.98e-15

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 66.37  E-value: 4.98e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E          11 PNSVSTNLGSTVKLSCkRSTGNiGSNYVNWYqqhegrspttmiyRDDKRPDGVPDRFSgsIDRSSNSALLTINNVQTEDE 90
Cdd:smart00410   1 PPSVTVKEGESVTLSC-EASGS-PPPEVTWY-------------KQGGKLLAESGRFS--VSRSGSTSTLTISNVTPEDS 63
                           90       100
                   ....*....|....*....|..
5XCV_E          91 ADYFCHSYSSGIVFGGGTKLTV 112
Cdd:smart00410  64 GTYTCAATNSSGSASSGTTLTV 85
IgV_H cd04981
Immunoglobulin (Ig) heavy chain (H), variable (V) domain; The members here are composed of the ...
8-112 4.95e-14

Immunoglobulin (Ig) heavy chain (H), variable (V) domain; The members here are composed of the immunoglobulin (Ig) heavy chain (H), variable (V) domain. This group contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.


Pssm-ID: 409370 [Multi-domain]  Cd Length: 118  Bit Score: 64.64  E-value: 4.95e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        8 LTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTM--IYRDDKRP---DGVPDRFSGSIDRSSNSALLTI 82
Cdd:cd04981   2 LQESGPGLVKPGQSLKLSCKASGFTFTSYGMGWVRQAPGKGLEWIglIYPGGGDTyyaDSFKGRFTITRDTSKSTAYLQL 81
                        90       100       110
                ....*....|....*....|....*....|....*.
5XCV_E       83 NNVQTEDEADYFC-----HSYSSGI-VFGGGTKLTV 112
Cdd:cd04981  82 NSLTSEDTAVYYCarglgGYGYSYFdYWGQGTTVTV 117
IgV_TCR_delta cd07706
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here ...
9-112 2.31e-13

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409503  Cd Length: 112  Bit Score: 62.54  E-value: 2.31e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        9 TQPNS-VSTNLGSTVKLSCKRSTgNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQT 87
Cdd:cd07706   3 TQAQPdVSVQVGEEVTLNCRYET-SWTNYYLFWYKQLPSGEMTFLIRQDSSEQNAKSGRYSVNFQKAQKSISLTISALQL 81
                        90       100
                ....*....|....*....|....*....
5XCV_E       88 EDEADYFCHSYSSG----IVFGGGTKLTV 112
Cdd:cd07706  82 EDSAKYFCALSLPYdtdkLIFGKGTRLTV 110
SARAH_SF cd21883
C-terminal SARAH domain found in scaffold protein salvador (Sav), Ras-association domain ...
120-164 6.23e-13

C-terminal SARAH domain found in scaffold protein salvador (Sav), Ras-association domain proteins, and mammalian STE20-like protein kinases (MST); The SARAH (Salvador-RassF-Hippo) domain family includes scaffold protein salvador (Sav), Ras-association domain proteins (RASSF1-6), and mammalian STE20-like protein kinase (MST) subfamily members (MST1-2 and Hippo). Sav is a scaffold protein mainly found in metazoans. Drosophila melanogaster Sav, also called Shar-pei (SHRP), promotes both cell cycle exit and apoptosis in Drosophila. It plays a key role in the Hippo/SWH (Sav/Wts/Hpo) signaling pathway. Human protein salvador homolog 1, also called 45 kDa WW domain protein (WW45), acts as a mammalian sterile 20-like kinase 1 (MST1)-binding protein required to enhance MST1-mediated apoptosis. It is a regulator of STK3/MST2 and STK4/MST1 in the Hippo signaling pathway. Classical RASSF proteins interact either directly or indirectly with activated Ras. Ras proteins are small GTPases that are involved in cellular signal transduction. They seem to modulate some of the growth inhibitory responses mediated by Ras and may serve as tumor suppressor genes. RASSF1-6 contains a conserved SARAH motif adjacent to the RA domain that functions in scaffolding and regulatory interactions. MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 and MST2 are STE20 family stress-activated, pro-apoptotic serine/threonine-protein kinases which, following caspase-cleavage, enter the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. They are key components of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. Hippo (Hpo), also called STE20-like kinase MST (dMST), is the Drosophila homolog of STE20-like protein kinases, MST1 and MST2. It is a STE20 family serine/threonine-protein kinase that functions as a tumor suppressor by restricting cell proliferation and promotes apoptosis in conjunction with salvador and warts. Hpo also plays a key role in the Hippo/SWH signaling pathway. This model corresponds to the C-terminal SARAH domain, a characteristic coiled-coil structure. It is a small helical module that is important in signal-transduction networks. The central function of the SARAH domain seems to be the mediation of homo- and heterodimerization between SARAH domain-containing proteins.


Pssm-ID: 439177  Cd Length: 45  Bit Score: 59.72  E-value: 6.23e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
5XCV_E      120 FLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEA 164
Cdd:cd21883   1 QLKNFSLPELQMFLKMLDPEEEREIEQLVKKYTAYRQAILDALEE 45
IgV_CD8_alpha cd05720
Immunoglobulin (Ig)-like variable (V) domain of Cluster of Differentiation (CD) 8 alpha chain; ...
17-104 1.45e-08

Immunoglobulin (Ig)-like variable (V) domain of Cluster of Differentiation (CD) 8 alpha chain; The members here are composed of the immunoglobulin (Ig)-like variable domain of the Cluster of Differentiation (CD) 8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation, and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners, etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion, and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409385  Cd Length: 110  Bit Score: 50.18  E-value: 1.45e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       17 NLGSTVKLSCKrsTGNIGSNYVNWYQQ--HEGRSPTTMIYRDDKRPDGVPD-----RFSGSidRSSNSALLTINNVQTED 89
Cdd:cd05720  11 QLGQKVELVCE--VLNSVPQGCSWLFQprGSAPQPTFLLYLSSSNKTKWAEgldskRFSGS--RSGSSYVLTLKDFRKED 86
                        90
                ....*....|....*
5XCV_E       90 EADYFCHSYSSGIVF 104
Cdd:cd05720  87 EGYYFCSVISNSVLY 101
IgV_CD8_beta cd07700
Immunoglobulin (Ig) variable (V) domain of Cluster of Differentiation (CD) 8 beta chain; The ...
11-112 4.07e-07

Immunoglobulin (Ig) variable (V) domain of Cluster of Differentiation (CD) 8 beta chain; The members here are composed of the immunoglobulin (Ig)-like domain in Cluster of Differentiation (CD) 8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation, and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners, etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion, and a short intracellular domain. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409497  Cd Length: 116  Bit Score: 46.29  E-value: 4.07e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       11 PNSVSTNLGSTVKLSC--KRSTGNIGsnyVNWYQQHEGRSPttmiyrdDKR--------PDGV--------PDRFSGSID 72
Cdd:cd07700   5 PGSLLVQTNQTVKMSCeaKTSPKNTR---IYWLRQRQAPSK-------DSHfeflaswdPSKGivygegvdQEKLIILSD 74
                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
5XCV_E       73 RSSNSALLTINNVQTEDEADYFCHSY-SSGIVFGGGTKLTV 112
Cdd:cd07700  75 SDSSRYILSLMSVKPEDSGTYFCMTVgSPELIFGTGTKLSV 115
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
7-95 2.26e-06

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 43.32  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E          7 VLTQPNSVSTNLGSTVKLSCkRSTGNigsnyvnwyqqhegRSPTTMIYRDDKRPDGVPDRfsgSIDRSSNSALLTINNVQ 86
Cdd:pfam13927   4 ITVSPSSVTVREGETVTLTC-EATGS--------------PPPTITWYKNGEPISSGSTR---SRSLSGSNSTLTISNVT 65

                  ....*....
5XCV_E         87 TEDEADYFC 95
Cdd:pfam13927  66 RSDAGTYTC 74
IgV_H_TCR_mu cd16095
T-cell receptor Mu, Heavy chain, variable (V) domain; The members here are composed of the ...
19-112 3.16e-06

T-cell receptor Mu, Heavy chain, variable (V) domain; The members here are composed of the immunoglobulin (Ig) heavy chain (H), variable (V) domain of the T-cell receptor Mu. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409514  Cd Length: 115  Bit Score: 43.70  E-value: 3.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       19 GSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHSY 98
Cdd:cd16095  15 GKTLSLKCQTSGFQFNTSQLSWYLWVPGHAPLWLTSLDHISTKVSEDRITSSREDTNSQIFLQIKGLGLRDSGQYHCARR 94
                        90       100
                ....*....|....*....|
5XCV_E       99 ------SSGIVFGGGTKLTV 112
Cdd:cd16095  95 vgygddTDKLIFGPGTDVIV 114
IgV_CD79b_beta cd16096
Immunoglobulin variable domain (IgV) Cluster of Differentiation (CD) 79B; The members here are ...
11-112 1.25e-04

Immunoglobulin variable domain (IgV) Cluster of Differentiation (CD) 79B; The members here are composed of the immunoglobulin variable domain (IgV) of the Cluster of Differentiation (CD) 79B (also known as CD79b molecule, immunoglobulin-associated beta (Ig-beta), and B29). The B lymphocyte antigen receptor is a multimeric complex that includes the antigen-specific component, surface immunoglobulin (Ig). Surface Ig non-covalently associates with two other proteins, Ig-alpha and Ig-beta, which are necessary for expression and function of the B-cell antigen receptor. This gene encodes the Ig-beta protein of the B-cell antigen component. Alternatively spliced transcript variants encoding different isoforms have been described. Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409515  Cd Length: 96  Bit Score: 39.16  E-value: 1.25e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       11 PNSVSTNLGSTVKLSC-KRSTGNigsnyVNWYQQHEGRSPTTMIYRDdkrpdgvpdrfsGSIDRSSNSAL--LTINNVQT 87
Cdd:cd16096   5 PRFAAKKRSSMVKFHCyTNYSGV-----MTWFRKKGNQRPQELFPED------------GRISQTQNGSVytLTIQNIQY 67
                        90       100
                ....*....|....*....|....*....
5XCV_E       88 EDEADYF----CHSYSSGIVFGGGTKLTV 112
Cdd:cd16096  68 EDNGIYFcqqkCNSTEPDVTDGCGTELLV 96
IgV_1_MRC-OX-2_like cd05846
First immunoglobulin (Ig) variable (V) domain of rat MRC OX-2 antigen, and similar domains; ...
18-112 1.51e-04

First immunoglobulin (Ig) variable (V) domain of rat MRC OX-2 antigen, and similar domains; The members here are composed of the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.


Pssm-ID: 409433  Cd Length: 108  Bit Score: 39.25  E-value: 1.51e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       18 LGSTVKLSCkRSTGNIGSNYVNWyQQHEGRSPTTMIYRDDKRpdGVP------DRFSGSIDRSSNSALlTINNVQTEDEA 91
Cdd:cd05846  12 LGGNATLSC-NLTLPEEVLQVTW-QKIKASSPENIVTYSKKY--GVKiqpsyvRRISFTSSGLNSTSI-TIWNVTLEDEG 86
                        90       100
                ....*....|....*....|...
5XCV_E       92 DYFC--HSYSSGIVfGGGTKLTV 112
Cdd:cd05846  87 CYKClfNTFPDGIK-SGTACLTV 108
IgV_pIgR_like cd05716
Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins; The ...
8-95 3.74e-04

Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins; The members here are composed of the immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins. pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their C-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620-residue extracellular region, a 23-residue transmembrane region, and a 103-residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. This group also contains the Ig-like extracellular domains of other receptors such as NK cell receptor Nkp44 and myeloid receptors, among others.


Pssm-ID: 409381  Cd Length: 100  Bit Score: 37.76  E-value: 3.74e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E        8 LTQPNSVSTNLGSTVKLSCKRSTGNigSNYVNWYQQHEGRSPTTMIyrdDKRPDGVPDRFSGSIDRSSNSALLTINNVQT 87
Cdd:cd05716   1 SVGPEVVTGVEGGSVTIQCPYPPKY--ASSRKYWCKWGSEGCQTLV---SSEGVVPGGRISLTDDPDNGVFTVTLNQLRK 75

                ....*...
5XCV_E       88 EDEADYFC 95
Cdd:cd05716  76 EDAGWYWC 83
IgV_P0-like cd05715
Immunoglobulin (Ig)-like domain of protein zero (P0) and similar proteins; The members here ...
19-95 4.21e-04

Immunoglobulin (Ig)-like domain of protein zero (P0) and similar proteins; The members here are composed of the immunoglobulin (Ig) domain of protein zero (P0), a myelin membrane adhesion molecule. P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of sodium channel subunit beta-2 (SCN2B), and of epithelial V-like antigen 1 (EVA). EVA, also known as myelin protein zero-like 2, is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. SCN2B subunits play a role in determining sodium channel density and function in neurons,and in control of electrical excitability in the brain.


Pssm-ID: 409380  Cd Length: 117  Bit Score: 38.18  E-value: 4.21e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       19 GSTVKLSCK-RSTGNIGSNY-VNWYQQHEGRSPTT---MIYRDDKRPDGVP---DRFSGSIDRSSNSALLTINNVQTEDE 90
Cdd:cd05715  14 GSDVRLTCTfTSCYTVGDAFsVTWTYQPEGGNTTEsmfHYSKGKPYILKVGrfkDRVSWAGNPSKKDASIVISNLQFSDN 93

                ....*
5XCV_E       91 ADYFC 95
Cdd:cd05715  94 GTYTC 98
I-set pfam07679
Immunoglobulin I-set domain;
7-95 4.42e-04

Immunoglobulin I-set domain;


Pssm-ID: 400151 [Multi-domain]  Cd Length: 90  Bit Score: 37.62  E-value: 4.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E          7 VLTQPNSVSTNLGSTVKLSCKrSTGNigsnyvnwyqqhegRSPTTMIYRDDK--RPDgvpDRFSgsIDRSSNSALLTINN 84
Cdd:pfam07679   3 FTQKPKDVEVQEGESARFTCT-VTGT--------------PDPEVSWFKDGQplRSS---DRFK--VTYEGGTYTLTISN 62
                          90
                  ....*....|.
5XCV_E         85 VQTEDEADYFC 95
Cdd:pfam07679  63 VQPDDSGKYTC 73
IgI_3_Contactin cd04968
Third immunoglobulin (Ig) domain of contactin; member of the I-set of Ig superfamily (IgSF) ...
10-95 1.12e-03

Third immunoglobulin (Ig) domain of contactin; member of the I-set of Ig superfamily (IgSF) domains; The members here are composed of the third immunoglobulin (Ig) domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. This group belongs to the I-set of IgSF domains.


Pssm-ID: 409357 [Multi-domain]  Cd Length: 88  Bit Score: 36.37  E-value: 1.12e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XCV_E       10 QPNSVSTNLGSTVKLSCkRSTGNIGSNyVNWyqqhegrspttmiyrddKRPDGVPdrFSGSIDRSSNsALLTINNVQTED 89
Cdd:cd04968   7 FPADTYALKGQTVTLEC-FALGNPVPQ-IKW-----------------RKVDGSP--SSQWEITTSE-PVLEIPNVQFED 64

                ....*.
5XCV_E       90 EADYFC 95
Cdd:cd04968  65 EGTYEC 70
CD19_protodomain_3_4 cd23998
CD19 (Cluster of Differentiation 19), a unique double immunoglobulin (Ig)-fold protodomain 3 ...
19-97 1.14e-03

CD19 (Cluster of Differentiation 19), a unique double immunoglobulin (Ig)-fold protodomain 3 and 4; CD19, also known as B-Lymphocyte Surface Antigen B4, T-Cell Surface Antigen Leu-12, and CVID3, is a transmembrane receptor present on various types of B cells, including progenitor, naive, and memory B cells, as well as plasmablasts. Until recently, it was believed to comprise two extracellular immunoglobulin (Ig) structural domains arranged in tandem with C2 topology. However, recent crystal structures have shown that the CD19 extracellular domain contains a unique double Ig domain that is responsible for its binding to proteins such as CD21, CD81, and CD225, which regulate B cell activation and survival. A recent analysis of the CD19 extracellular domain sequence reveals two "Ig domains", but the structure demonstrates that these two domains are not folded independently and connected in tandem. Rather, they fold together as one intertwined domain that can be referred to as a "double Ig" domain. Each of the two regular Ig domain sequences has a noticeably short linker that forms a loop between strands C' and D, rather than allowing the formation of a C" strand. Additionally, the two Ig-domain sequences are separated by a long linker that is structured as a small insertion domain, enabling both Ig sequences to fold together as a unique double Ig-domain. The CD19 domain comprises four "protodomains": two formed by A'B-CC' strands and two by DE-FG strands that interdigitate to form a novel double Ig fold. When analyzing this double Ig domain in terms of the usual Ig-fold, A'B-CC' protodomain of the first Ig sequence combines with DE-FG protodomain of the second, and vice versa. Hence, the second combined Ig fold is inverted, with DE-FG protodomain of the first Ig sequence combining with A'B-CC' protodomain of the second Ig sequence and in that order, as if it were a circular permutation, obtained only through structural folding. This group contains the protodomains 3 and 4 of the CD19 double Ig domain.


Pssm-ID: 467825  Cd Length: 95  Bit Score: 36.31  E-value: 1.14e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
5XCV_E       19 GSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKrpDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHS 97
Cdd:cd23998   8 GSTLWLSCGVPPDSGTRGPISWTHVHPKPSNTSLLSLELK--EDRPAREKWVLGTLRGGALLLLPRATAQDAGIYHCHL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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