NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1938952372|pdb|5XTC|n]
View 

Chain n, NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

Protein Classification

NADH_oxidored domain-containing protein( domain architecture ID 10547183)

NADH_oxidored domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NADH_oxidored pfam08040
MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase ...
 1-56 1.55e-36

MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase complex. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear.


:

Pssm-ID: 462345  Cd Length: 56  Bit Score: 115.63  E-value: 1.55e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
5XTC_n         1 NLLQIVRDHWVHVLVPMGFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVTWK 56
Cdd:pfam08040  1 NLLQLVRDHWVHVLVPMGFVIGWYLDRKNDEKLTAFRNKSMLYKRELKPGEEVTWK 56
 
Name Accession Description Interval E-value
NADH_oxidored pfam08040
MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase ...
 1-56 1.55e-36

MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase complex. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear.


Pssm-ID: 462345  Cd Length: 56  Bit Score: 115.63  E-value: 1.55e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
5XTC_n         1 NLLQIVRDHWVHVLVPMGFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVTWK 56
Cdd:pfam08040  1 NLLQLVRDHWVHVLVPMGFVIGWYLDRKNDEKLTAFRNKSMLYKRELKPGEEVTWK 56
 
Name Accession Description Interval E-value
NADH_oxidored pfam08040
MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase ...
 1-56 1.55e-36

MNLL subunit; This family consists of the MNLL subunits of NADH-ubiquinone oxidoreductase complex. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear.


Pssm-ID: 462345  Cd Length: 56  Bit Score: 115.63  E-value: 1.55e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
5XTC_n         1 NLLQIVRDHWVHVLVPMGFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVTWK 56
Cdd:pfam08040  1 NLLQLVRDHWVHVLVPMGFVIGWYLDRKNDEKLTAFRNKSMLYKRELKPGEEVTWK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH