NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2038648867|pdb|7EGD|J]
View 

Chain J, Transcription initiation factor TFIID subunit 10

Protein Classification

transcription initiation factor TFIID subunit 10( domain architecture ID 10168402)

transcription initiation factor TFIID subunit 10 is part of the multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HFD_TAF10 cd07982
histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and ...
 115-211 1.06e-58

histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and similar proteins; TAF10, also called TATA Binding Protein (TBP) associated factor 10, STAF28, transcription initiation factor TFIID 30 kDa subunit, TAF(II)30, TAFII-30, or TAFII30, is a TBP-associated factor (TAF). TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex, and TBP-free TAFII complex (TFTC). TIIFD is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. TFIID and PCAF are composed of TATA binding protein (TBP) and several TAFs. TBP is not part of TFTC. TAF10 regulates genes that are important for cell cycle progression and cell morphology. A lack of TAF10 leads to cell cycle arrest and cell death by apoptosis in mice.


:

Pssm-ID: 467026  Cd Length: 98  Bit Score: 180.06  E-value: 1.06e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7EGD_J      115 PLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYT 194
Cdd:cd07982   2 ELEEFLEQLEDYTPTIPDEVTQYYLERAGFQTSDPRVVRLISLAAQKFISDIANDALQYCKMRQSAQKKKGKKGKDKKLV 81

                        90
                ....*....|....*..
7EGD_J      195 LTMEDLTPALSEYGINV 211
Cdd:cd07982  82 LTMEDLAAALKEYGINV 98
 
Name Accession Description Interval E-value
HFD_TAF10 cd07982
histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and ...
 115-211 1.06e-58

histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and similar proteins; TAF10, also called TATA Binding Protein (TBP) associated factor 10, STAF28, transcription initiation factor TFIID 30 kDa subunit, TAF(II)30, TAFII-30, or TAFII30, is a TBP-associated factor (TAF). TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex, and TBP-free TAFII complex (TFTC). TIIFD is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. TFIID and PCAF are composed of TATA binding protein (TBP) and several TAFs. TBP is not part of TFTC. TAF10 regulates genes that are important for cell cycle progression and cell morphology. A lack of TAF10 leads to cell cycle arrest and cell death by apoptosis in mice.


Pssm-ID: 467026  Cd Length: 98  Bit Score: 180.06  E-value: 1.06e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7EGD_J      115 PLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYT 194
Cdd:cd07982   2 ELEEFLEQLEDYTPTIPDEVTQYYLERAGFQTSDPRVVRLISLAAQKFISDIANDALQYCKMRQSAQKKKGKKGKDKKLV 81

                        90
                ....*....|....*..
7EGD_J      195 LTMEDLTPALSEYGINV 211
Cdd:cd07982  82 LTMEDLAAALKEYGINV 98
COG5162 COG5162
Transcription initiation factor TFIID, subunit TAF10 (also component of histone ...
 116-217 8.06e-33

Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription];


Pssm-ID: 227491  Cd Length: 197  Bit Score: 117.46  E-value: 8.06e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7EGD_J      116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDR---- 191
Cdd:COG5162  75 LEELLQNMDSYTPLIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSRIRQGSSNAKATAQKAKrfak 154

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
7EGD_J      192 ----------------KYTLTMEDLTPALSEYGINVKKPHYF 217
Cdd:COG5162 155 ggasgigssgrrgdrkKPVLTVVDLSKALEEYGINISRPDFY 196
TFIID_30kDa pfam03540
Transcription initiation factor TFIID 23-30kDa subunit;
129-177 1.86e-29

Transcription initiation factor TFIID 23-30kDa subunit;


Pssm-ID: 460964  Cd Length: 49  Bit Score: 103.74  E-value: 1.86e-29
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
7EGD_J        129 TIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMK 177
Cdd:pfam03540   1 TIPDEVTDYYLEKAGFETSDPRVKRLISLAAQKFISDIANDAYQYAKIR 49
 
Name Accession Description Interval E-value
HFD_TAF10 cd07982
histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and ...
 115-211 1.06e-58

histone-fold domain found in transcription initiation factor TFIID subunit 10 (TAF10) and similar proteins; TAF10, also called TATA Binding Protein (TBP) associated factor 10, STAF28, transcription initiation factor TFIID 30 kDa subunit, TAF(II)30, TAFII-30, or TAFII30, is a TBP-associated factor (TAF). TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex, and TBP-free TAFII complex (TFTC). TIIFD is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. TFIID and PCAF are composed of TATA binding protein (TBP) and several TAFs. TBP is not part of TFTC. TAF10 regulates genes that are important for cell cycle progression and cell morphology. A lack of TAF10 leads to cell cycle arrest and cell death by apoptosis in mice.


Pssm-ID: 467026  Cd Length: 98  Bit Score: 180.06  E-value: 1.06e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7EGD_J      115 PLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYT 194
Cdd:cd07982   2 ELEEFLEQLEDYTPTIPDEVTQYYLERAGFQTSDPRVVRLISLAAQKFISDIANDALQYCKMRQSAQKKKGKKGKDKKLV 81

                        90
                ....*....|....*..
7EGD_J      195 LTMEDLTPALSEYGINV 211
Cdd:cd07982  82 LTMEDLAAALKEYGINV 98
COG5162 COG5162
Transcription initiation factor TFIID, subunit TAF10 (also component of histone ...
 116-217 8.06e-33

Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription];


Pssm-ID: 227491  Cd Length: 197  Bit Score: 117.46  E-value: 8.06e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7EGD_J      116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDR---- 191
Cdd:COG5162  75 LEELLQNMDSYTPLIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSRIRQGSSNAKATAQKAKrfak 154

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
7EGD_J      192 ----------------KYTLTMEDLTPALSEYGINVKKPHYF 217
Cdd:COG5162 155 ggasgigssgrrgdrkKPVLTVVDLSKALEEYGINISRPDFY 196
TFIID_30kDa pfam03540
Transcription initiation factor TFIID 23-30kDa subunit;
129-177 1.86e-29

Transcription initiation factor TFIID 23-30kDa subunit;


Pssm-ID: 460964  Cd Length: 49  Bit Score: 103.74  E-value: 1.86e-29
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
7EGD_J        129 TIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMK 177
Cdd:pfam03540   1 TIPDEVTDYYLEKAGFETSDPRVKRLISLAAQKFISDIANDAYQYAKIR 49
HFD_TAF8 cd22918
histone-fold domain found in transcription initiation factor TFIID subunit 8 (TAF8) and ...
 142-212 2.35e-03

histone-fold domain found in transcription initiation factor TFIID subunit 8 (TAF8) and similar proteins; TAF8, also called TATA Binding Protein (TBP) associated factor 8, protein taube nuss, TBP-associated factor 43 kDa, TBP-associated factor 8, or transcription initiation factor TFIID 43 kDa subunit (TAFII-43, TAFII43), is a component of the TFIID complex that is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). TFIID is one of the general transcription factors required for accurate and regulated initiation by RNA polymerase II. It plays a central role in mediating promoter responses to various activators and repressors. TAF8 mediates both basal and activator-dependent transcription. It is involved in the differentiation of preadipocyte fibroblasts to adipocytes, however, it does not seem to play a role in differentiation of myoblasts. TAF8 is required for the integration of TAF10 in the TAF complex. It may be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.


Pssm-ID: 467043  Cd Length: 84  Bit Score: 35.99  E-value: 2.35e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
7EGD_J      142 AGFEASDPRIIRLISLAAQKFISDIANDALQHCKMkgtasgSSRSKskdrkytLTMEDLTPALSEYGINVK 212
Cdd:cd22918  17 AGFESAEKSALETLTEMLQSYLTEIGRSSKAYCEL------AGRTE-------PTLSDVVLALIDMGINVD 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH