NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1951685444|pdb|7JIL|f]
View 

Chain f, 50S ribosomal protein L36

Protein Classification

50S ribosomal protein L36( domain architecture ID 10452018)

50S ribosomal protein L36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0003735|GO:0006412|GO:0005840
PubMed:  27986857

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 6.19e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440027  Cd Length: 38  Bit Score: 52.43  E-value: 6.19e-12
                       10        20        30
               ....*....|....*....|....*....|....*...
7JIL_f       1 MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:COG0257  1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 6.19e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 52.43  E-value: 6.19e-12
                       10        20        30
               ....*....|....*....|....*....|....*...
7JIL_f       1 MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:COG0257  1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 5.34e-11

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 49.82  E-value: 5.34e-11
                         10        20        30
                 ....*....|....*....|....*....|....*...
7JIL_f         1 MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-38 5.70e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 44.98  E-value: 5.70e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
7JIL_f        1 MKVRASVKK---RSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:PRK00831  1 MKVRNSLKSlknRHRDCQVVRRKGRVYVINKKNPRFKARQG 41
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 6.19e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 52.43  E-value: 6.19e-12
                       10        20        30
               ....*....|....*....|....*....|....*...
7JIL_f       1 MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:COG0257  1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 5.34e-11

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 49.82  E-value: 5.34e-11
                         10        20        30
                 ....*....|....*....|....*....|....*...
7JIL_f         1 MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-38 5.70e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 44.98  E-value: 5.70e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
7JIL_f        1 MKVRASVKK---RSAECIIVRRKGRLYVINKKNPRFKQRQG 38
Cdd:PRK00831  1 MKVRNSLKSlknRHRDCQVVRRKGRVYVINKKNPRFKARQG 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH