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Chain B, Photosystem II CP47 reaction center protein
Protein Classification
photosystem II chlorophyll-binding protein CP47 ( domain architecture ID 18823719 )
photosystem II chlorophyll-binding protein CP47 is a component of the core complex of photosystem II (PSII); it binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII
List of domain hits
Name
Accession
Description
Interval
E-value
PsbB
COG5717 Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and ...
1-506
0e+00
Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and conversion]; Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444427
Cd Length: 510
Bit Score: 943.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRLIAVH I MH N AL C AG F AGSM L L F ELA L FDPSDPVLNPMWRQG C F L MPF VS RLGV V NSW Q GWSV 80
Cdd:COG5717 1 MGLPWYRVHT V VLNDPGRLIAVH L MH T AL V AG W AGSM A L Y ELA I FDPSDPVLNPMWRQG M F V MPF MA RLGV T NSW G GWSV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGE TFTN PGFW T FE T VA I AHI IF SGL S FLAACWHWVYWD VAT F F DP KTD EP VI DLPK V FGIHL T LAG I LCFGFGAFHLTG 160
Cdd:COG5717 81 TGE SVAD PGFW S FE G VA A AHI VL SGL L FLAACWHWVYWD LEI F R DP RNG EP AL DLPK I FGIHL L LAG L LCFGFGAFHLTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L FGPGMWVSDP L GLTGH I Q G VAP E WGA A GF D P H NPGGVVAHHIA L GIV A IIGG L FHI F VRPPE Y LYK G LRMGNIE GT LAS 240
Cdd:COG5717 161 I FGPGMWVSDP Y GLTGH V Q P VAP A WGA E GF N P Y NPGGVVAHHIA A GIV G IIGG I FHI V VRPPE R LYK A LRMGNIE TV LAS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AF IA AGTMWYGTATTPIEL W GPTRYQWDQG F F QQA I S R Q V K A SISD GKS P SEAWS E IP T KLAFYDY I GNSPA 320
Cdd:COG5717 241 A LA AV F FA AF VV AGTMWYGTATTPIEL F GPTRYQWDQG Y F KKE I N R R V Q A NLAE GKS L SEAWS A IP E KLAFYDY V GNSPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFRVG R M VD GDG LP T G WLGHPVFKD G EGREL T VRRMPNFFE N FPVVL F D Q DGIVRADIPFR Q AESKY GI EQTGVTVS 400
Cdd:COG5717 321 KGGLFRVG P M NN GDG VA T A WLGHPVFKD K EGREL F VRRMPNFFE T FPVVL T D K DGIVRADIPFR R AESKY SF EQTGVTVS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 F Y GG E L D GQTF S DP K DVKKYAR R AQLGEPFEFDR SV Y D SDG L FRTS N RG F FAF F H VI F G LL W FFGHIWHG L R AL F Q DVF S 480
Cdd:COG5717 401 F V GG T L N GQTF T DP A DVKKYAR K AQLGEPFEFDR ET Y N SDG V FRTS T RG W FAF A H AC F A LL F FFGHIWHG A R TI F R DVF A 480
490 500
....*....|....*....|....*.
7SA3_B 481 GIDP S L SA EQVE W G Y F K K V GDPT SQQ 506
Cdd:COG5717 481 GIDP D L QE EQVE F G V F Q K L GDPT TRK 506
Name
Accession
Description
Interval
E-value
PsbB
COG5717 Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and ...
1-506
0e+00
Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and conversion]; Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444427
Cd Length: 510
Bit Score: 943.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRLIAVH I MH N AL C AG F AGSM L L F ELA L FDPSDPVLNPMWRQG C F L MPF VS RLGV V NSW Q GWSV 80
Cdd:COG5717 1 MGLPWYRVHT V VLNDPGRLIAVH L MH T AL V AG W AGSM A L Y ELA I FDPSDPVLNPMWRQG M F V MPF MA RLGV T NSW G GWSV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGE TFTN PGFW T FE T VA I AHI IF SGL S FLAACWHWVYWD VAT F F DP KTD EP VI DLPK V FGIHL T LAG I LCFGFGAFHLTG 160
Cdd:COG5717 81 TGE SVAD PGFW S FE G VA A AHI VL SGL L FLAACWHWVYWD LEI F R DP RNG EP AL DLPK I FGIHL L LAG L LCFGFGAFHLTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L FGPGMWVSDP L GLTGH I Q G VAP E WGA A GF D P H NPGGVVAHHIA L GIV A IIGG L FHI F VRPPE Y LYK G LRMGNIE GT LAS 240
Cdd:COG5717 161 I FGPGMWVSDP Y GLTGH V Q P VAP A WGA E GF N P Y NPGGVVAHHIA A GIV G IIGG I FHI V VRPPE R LYK A LRMGNIE TV LAS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AF IA AGTMWYGTATTPIEL W GPTRYQWDQG F F QQA I S R Q V K A SISD GKS P SEAWS E IP T KLAFYDY I GNSPA 320
Cdd:COG5717 241 A LA AV F FA AF VV AGTMWYGTATTPIEL F GPTRYQWDQG Y F KKE I N R R V Q A NLAE GKS L SEAWS A IP E KLAFYDY V GNSPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFRVG R M VD GDG LP T G WLGHPVFKD G EGREL T VRRMPNFFE N FPVVL F D Q DGIVRADIPFR Q AESKY GI EQTGVTVS 400
Cdd:COG5717 321 KGGLFRVG P M NN GDG VA T A WLGHPVFKD K EGREL F VRRMPNFFE T FPVVL T D K DGIVRADIPFR R AESKY SF EQTGVTVS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 F Y GG E L D GQTF S DP K DVKKYAR R AQLGEPFEFDR SV Y D SDG L FRTS N RG F FAF F H VI F G LL W FFGHIWHG L R AL F Q DVF S 480
Cdd:COG5717 401 F V GG T L N GQTF T DP A DVKKYAR K AQLGEPFEFDR ET Y N SDG V FRTS T RG W FAF A H AC F A LL F FFGHIWHG A R TI F R DVF A 480
490 500
....*....|....*....|....*.
7SA3_B 481 GIDP S L SA EQVE W G Y F K K V GDPT SQQ 506
Cdd:COG5717 481 GIDP D L QE EQVE F G V F Q K L GDPT TRK 506
psbB
CHL00062 photosystem II 47 kDa protein
1-504
0e+00
photosystem II 47 kDa protein
Pssm-ID: 214350
Cd Length: 504
Bit Score: 903.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRLI A VH I MH N AL C AG F AGSM L L F ELA L FDPSDPVL N PMWRQG C F LM PF VS RLG VV NSW Q GWS V 80
Cdd:CHL00062 1 MGLPWYRVHT V VLNDPGRLI S VH L MH T AL V AG W AGSM A L Y ELA V FDPSDPVL D PMWRQG M F VI PF MT RLG IT NSW G GWS I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET F TNPG F W TF E T VA I AHI IF SGL S FLAA C WHWVYWD VAT F F D PK T DE P VI DLPK V FGIHL T L A G I LCFGFGAFH L TG 160
Cdd:CHL00062 81 TGET V TNPG I W SY E G VA G AHI VL SGL C FLAA I WHWVYWD LEI F R D ER T GK P SL DLPK I FGIHL F L S G V LCFGFGAFH V TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L F GPG M WVSDP L GLTG HI Q G V A P E WGA A GFDP HN PGG VVA HHIA L G IVA I IG GLFH IF VRPP EY LYKGLRMGNIE GT L A S 240
Cdd:CHL00062 161 L Y GPG I WVSDP Y GLTG KV Q P V N P A WGA E GFDP FV PGG IAS HHIA A G TLG I LA GLFH LS VRPP QR LYKGLRMGNIE TV L S S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 GL A VF F SG AF IA AGTMWYG T ATTPIEL W GPTRYQWDQG F FQQ A I S R Q V K A SISDGK S P SEAWS E IP T KLAFYDYIGN S PA 320
Cdd:CHL00062 241 SI A AV F FA AF VV AGTMWYG S ATTPIEL F GPTRYQWDQG Y FQQ E I Y R R V S A GLAENL S L SEAWS K IP E KLAFYDYIGN N PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFR V G R M VD GDG LPT GWLGHP V F K D G EGREL T VRRMP N FFE N FPVVL F D Q DGIVRAD I PFR Q AESKY GI EQ T GVTV S 400
Cdd:CHL00062 321 KGGLFR A G A M DN GDG IAV GWLGHP I F R D K EGREL F VRRMP T FFE T FPVVL V D K DGIVRAD V PFR R AESKY SV EQ V GVTV E 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGGEL D G QT FSDP KD VKKYARRAQLGE P FEFDR SVYD SDG L FR T S N RG F F A F F H VI F G LL W FFGHIWHG L R A LF Q DVF S 480
Cdd:CHL00062 401 FYGGEL N G VS FSDP AT VKKYARRAQLGE I FEFDR ATLK SDG V FR S S P RG W F T F G H AS F A LL F FFGHIWHG A R T LF R DVF A 480
490 500
....*....|....*....|....
7SA3_B 481 GIDP S L S a E QVE W G Y F K K V GDPT S 504
Cdd:CHL00062 481 GIDP D L D - A QVE F G A F Q K L GDPT T 503
PS_II_CP47
TIGR03039 photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
1-505
0e+00
photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
Pssm-ID: 163117
Cd Length: 504
Bit Score: 834.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S V L NDPGRLIAVH I MH N AL C AG F AGSM L L F ELA L FDPSDPVLNPMWRQG CFLM PF VS RLGV VN SW Q GWS V 80
Cdd:TIGR03039 1 MGLPWYRVHT V V I NDPGRLIAVH L MH T AL V AG W AGSM A L Y ELA I FDPSDPVLNPMWRQG MYVL PF MA RLGV TG SW G GWS I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET FTN PGFW T FE T VA I AHI IF SGL S FLAACWHWVYWD VAT F F DP K T D EP VI DLPK V FGIHL T L A G I LCFGFGAFHL T G 160
Cdd:TIGR03039 81 TGET GVD PGFW S FE G VA A AHI VL SGL L FLAACWHWVYWD LEL F R DP R T G EP AL DLPK I FGIHL F L S G L LCFGFGAFHL S G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 LFGPGMWVSDP L GLTGH I Q G VAPEWGA A GF D P H NPGG V VAHHIA L GIV A IIGGLFHI F VRPPE Y LYK G LRMGNIE GT LAS 240
Cdd:TIGR03039 161 LFGPGMWVSDP Y GLTGH V Q P VAPEWGA D GF N P F NPGG I VAHHIA A GIV G IIGGLFHI T VRPPE R LYK A LRMGNIE TV LAS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AF IA AGTMWYG T ATTP I EL W GPTRYQWDQG F F Q Q A I S R Q V K A SISD G K S PS EAWS E IP T KLAFYDY I GNSPA 320
Cdd:TIGR03039 241 S LA AV F FA AF VV AGTMWYG S ATTP V EL F GPTRYQWDQG Y F R Q E I N R R V Q A AVAS G A S LE EAWS A IP E KLAFYDY V GNSPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFR V G R M VD GDG LP TGWLGH P VFKD G EGREL T VRR M PNFFENFPV V L F D QD G I VRADIPFR Q AESKY GI EQTGVTVS 400
Cdd:TIGR03039 321 KGGLFR T G P M NN GDG IA TGWLGH I VFKD K EGREL R VRR L PNFFENFPV I L T D SN G V VRADIPFR R AESKY SF EQTGVTVS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGG E L D GQTF S DP KD VK K YAR R AQLGE P FEFD RSVYD SDG L FRTS N RG F F A F F H VI F G LL W FFGHIWHG L R A LF Q DVF S 480
Cdd:TIGR03039 401 FYGG D L N GQTF T DP AQ VK S YAR K AQLGE A FEFD TETLN SDG V FRTS P RG W F T F A H AV F A LL F FFGHIWHG A R T LF R DVF A 480
490 500
....*....|....*....|....*
7SA3_B 481 GIDP S L S a EQVE W G Y F K K V GDPT SQ 505
Cdd:TIGR03039 481 GIDP D L G - EQVE F G V F Q K L GDPT TR 504
PSII
pfam00421 Photosystem II protein;
1-501
0e+00
Photosystem II protein;
Pssm-ID: 425673
Cd Length: 499
Bit Score: 783.62
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S V L NDPGRL IA VH I MH N AL C AG F AGSM L LFELA L FDPSDPVL N PMWRQG CFL MPF VS RLGV VN SW Q GWSV 80
Cdd:pfam00421 1 MGLPWYRVHT V V I NDPGRL LG VH L MH T AL V AG W AGSM A LFELA H FDPSDPVL K PMWRQG MIV MPF MA RLGV TV SW G GWSV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET F TNPGFW T FE T VA I AHII F SGL S FLAA C WHWVYWD VATFF D PK T D EP VI DLPK V FGIHL T L A G IL CFGFGAFH L TG 160
Cdd:pfam00421 81 TGET V TNPGFW S FE G VA A AHII L SGL L FLAA I WHWVYWD LEIWK D KR T G EP AL DLPK I FGIHL I L L G LG CFGFGAFH F TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L F G p GMWVSDP L G L TGH I Q G VAP E WGA A GF D P H NPGG V V A HHIA L GI VA IIGG L FHI FV RPPE Y LY KG LRMGN I E GT L A S 240
Cdd:pfam00421 161 L Y G - GMWVSDP Y G Y TGH V Q P VAP V WGA E GF N P F NPGG I V G HHIA A GI LG IIGG I FHI TT RPPE R LY RA LRMGN G E TV L S S 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AFIAAGTMWYG T ATTP I EL W GPTRYQWD Q G F FQQ A I S R Q V KA S ISD G K S PSE AWS E IP T KLAFYDYIGN S PA 320
Cdd:pfam00421 240 S LA AV F FA AFIAAGTMWYG N ATTP S EL F GPTRYQWD S G Y FQQ E I D R R V QS S VAE G A S QAQ AWS F IP R KLAFYDYIGN A PA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFRVG R MV D GDGL PTG WLGH PV F K D GE GREL T VRRMPNFFE N FPVVL F D Q DGIVRADIPFR QA ESKY GI EQ T GVTV S 400
Cdd:pfam00421 320 KGGLFRVG P MV N GDGL ARS WLGH II F G D ET GREL D VRRMPNFFE T FPVVL V D K DGIVRADIPFR RG ESKY SL EQ L GVTV Q 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGGEL D GQTF S DP KD VK K YAR R AQLGE P F E FDR SVYD SDG L FR T S N RG FF AF F H VI F G LL W FFGH I WHG L R A LF Q DVF S 480
Cdd:pfam00421 400 FYGGEL N GQTF T DP WQ VK R YAR H AQLGE L F S FDR VTTE SDG V FR S S P RG WL AF G H FC F A LL F FFGH L WHG G R T LF R DVF A 479
490 500
....*....|....*....|.
7SA3_B 481 G ID P SLS a E QVE W G Y F K K V GD 501
Cdd:pfam00421 480 G FE P GID - R QVE F G V F Q K L GD 499
Name
Accession
Description
Interval
E-value
PsbB
COG5717 Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and ...
1-506
0e+00
Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and conversion]; Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444427
Cd Length: 510
Bit Score: 943.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRLIAVH I MH N AL C AG F AGSM L L F ELA L FDPSDPVLNPMWRQG C F L MPF VS RLGV V NSW Q GWSV 80
Cdd:COG5717 1 MGLPWYRVHT V VLNDPGRLIAVH L MH T AL V AG W AGSM A L Y ELA I FDPSDPVLNPMWRQG M F V MPF MA RLGV T NSW G GWSV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGE TFTN PGFW T FE T VA I AHI IF SGL S FLAACWHWVYWD VAT F F DP KTD EP VI DLPK V FGIHL T LAG I LCFGFGAFHLTG 160
Cdd:COG5717 81 TGE SVAD PGFW S FE G VA A AHI VL SGL L FLAACWHWVYWD LEI F R DP RNG EP AL DLPK I FGIHL L LAG L LCFGFGAFHLTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L FGPGMWVSDP L GLTGH I Q G VAP E WGA A GF D P H NPGGVVAHHIA L GIV A IIGG L FHI F VRPPE Y LYK G LRMGNIE GT LAS 240
Cdd:COG5717 161 I FGPGMWVSDP Y GLTGH V Q P VAP A WGA E GF N P Y NPGGVVAHHIA A GIV G IIGG I FHI V VRPPE R LYK A LRMGNIE TV LAS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AF IA AGTMWYGTATTPIEL W GPTRYQWDQG F F QQA I S R Q V K A SISD GKS P SEAWS E IP T KLAFYDY I GNSPA 320
Cdd:COG5717 241 A LA AV F FA AF VV AGTMWYGTATTPIEL F GPTRYQWDQG Y F KKE I N R R V Q A NLAE GKS L SEAWS A IP E KLAFYDY V GNSPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFRVG R M VD GDG LP T G WLGHPVFKD G EGREL T VRRMPNFFE N FPVVL F D Q DGIVRADIPFR Q AESKY GI EQTGVTVS 400
Cdd:COG5717 321 KGGLFRVG P M NN GDG VA T A WLGHPVFKD K EGREL F VRRMPNFFE T FPVVL T D K DGIVRADIPFR R AESKY SF EQTGVTVS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 F Y GG E L D GQTF S DP K DVKKYAR R AQLGEPFEFDR SV Y D SDG L FRTS N RG F FAF F H VI F G LL W FFGHIWHG L R AL F Q DVF S 480
Cdd:COG5717 401 F V GG T L N GQTF T DP A DVKKYAR K AQLGEPFEFDR ET Y N SDG V FRTS T RG W FAF A H AC F A LL F FFGHIWHG A R TI F R DVF A 480
490 500
....*....|....*....|....*.
7SA3_B 481 GIDP S L SA EQVE W G Y F K K V GDPT SQQ 506
Cdd:COG5717 481 GIDP D L QE EQVE F G V F Q K L GDPT TRK 506
psbB
CHL00062 photosystem II 47 kDa protein
1-504
0e+00
photosystem II 47 kDa protein
Pssm-ID: 214350
Cd Length: 504
Bit Score: 903.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRLI A VH I MH N AL C AG F AGSM L L F ELA L FDPSDPVL N PMWRQG C F LM PF VS RLG VV NSW Q GWS V 80
Cdd:CHL00062 1 MGLPWYRVHT V VLNDPGRLI S VH L MH T AL V AG W AGSM A L Y ELA V FDPSDPVL D PMWRQG M F VI PF MT RLG IT NSW G GWS I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET F TNPG F W TF E T VA I AHI IF SGL S FLAA C WHWVYWD VAT F F D PK T DE P VI DLPK V FGIHL T L A G I LCFGFGAFH L TG 160
Cdd:CHL00062 81 TGET V TNPG I W SY E G VA G AHI VL SGL C FLAA I WHWVYWD LEI F R D ER T GK P SL DLPK I FGIHL F L S G V LCFGFGAFH V TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L F GPG M WVSDP L GLTG HI Q G V A P E WGA A GFDP HN PGG VVA HHIA L G IVA I IG GLFH IF VRPP EY LYKGLRMGNIE GT L A S 240
Cdd:CHL00062 161 L Y GPG I WVSDP Y GLTG KV Q P V N P A WGA E GFDP FV PGG IAS HHIA A G TLG I LA GLFH LS VRPP QR LYKGLRMGNIE TV L S S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 GL A VF F SG AF IA AGTMWYG T ATTPIEL W GPTRYQWDQG F FQQ A I S R Q V K A SISDGK S P SEAWS E IP T KLAFYDYIGN S PA 320
Cdd:CHL00062 241 SI A AV F FA AF VV AGTMWYG S ATTPIEL F GPTRYQWDQG Y FQQ E I Y R R V S A GLAENL S L SEAWS K IP E KLAFYDYIGN N PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFR V G R M VD GDG LPT GWLGHP V F K D G EGREL T VRRMP N FFE N FPVVL F D Q DGIVRAD I PFR Q AESKY GI EQ T GVTV S 400
Cdd:CHL00062 321 KGGLFR A G A M DN GDG IAV GWLGHP I F R D K EGREL F VRRMP T FFE T FPVVL V D K DGIVRAD V PFR R AESKY SV EQ V GVTV E 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGGEL D G QT FSDP KD VKKYARRAQLGE P FEFDR SVYD SDG L FR T S N RG F F A F F H VI F G LL W FFGHIWHG L R A LF Q DVF S 480
Cdd:CHL00062 401 FYGGEL N G VS FSDP AT VKKYARRAQLGE I FEFDR ATLK SDG V FR S S P RG W F T F G H AS F A LL F FFGHIWHG A R T LF R DVF A 480
490 500
....*....|....*....|....
7SA3_B 481 GIDP S L S a E QVE W G Y F K K V GDPT S 504
Cdd:CHL00062 481 GIDP D L D - A QVE F G A F Q K L GDPT T 503
PS_II_CP47
TIGR03039 photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
1-505
0e+00
photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
Pssm-ID: 163117
Cd Length: 504
Bit Score: 834.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S V L NDPGRLIAVH I MH N AL C AG F AGSM L L F ELA L FDPSDPVLNPMWRQG CFLM PF VS RLGV VN SW Q GWS V 80
Cdd:TIGR03039 1 MGLPWYRVHT V V I NDPGRLIAVH L MH T AL V AG W AGSM A L Y ELA I FDPSDPVLNPMWRQG MYVL PF MA RLGV TG SW G GWS I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET FTN PGFW T FE T VA I AHI IF SGL S FLAACWHWVYWD VAT F F DP K T D EP VI DLPK V FGIHL T L A G I LCFGFGAFHL T G 160
Cdd:TIGR03039 81 TGET GVD PGFW S FE G VA A AHI VL SGL L FLAACWHWVYWD LEL F R DP R T G EP AL DLPK I FGIHL F L S G L LCFGFGAFHL S G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 LFGPGMWVSDP L GLTGH I Q G VAPEWGA A GF D P H NPGG V VAHHIA L GIV A IIGGLFHI F VRPPE Y LYK G LRMGNIE GT LAS 240
Cdd:TIGR03039 161 LFGPGMWVSDP Y GLTGH V Q P VAPEWGA D GF N P F NPGG I VAHHIA A GIV G IIGGLFHI T VRPPE R LYK A LRMGNIE TV LAS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AF IA AGTMWYG T ATTP I EL W GPTRYQWDQG F F Q Q A I S R Q V K A SISD G K S PS EAWS E IP T KLAFYDY I GNSPA 320
Cdd:TIGR03039 241 S LA AV F FA AF VV AGTMWYG S ATTP V EL F GPTRYQWDQG Y F R Q E I N R R V Q A AVAS G A S LE EAWS A IP E KLAFYDY V GNSPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFR V G R M VD GDG LP TGWLGH P VFKD G EGREL T VRR M PNFFENFPV V L F D QD G I VRADIPFR Q AESKY GI EQTGVTVS 400
Cdd:TIGR03039 321 KGGLFR T G P M NN GDG IA TGWLGH I VFKD K EGREL R VRR L PNFFENFPV I L T D SN G V VRADIPFR R AESKY SF EQTGVTVS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGG E L D GQTF S DP KD VK K YAR R AQLGE P FEFD RSVYD SDG L FRTS N RG F F A F F H VI F G LL W FFGHIWHG L R A LF Q DVF S 480
Cdd:TIGR03039 401 FYGG D L N GQTF T DP AQ VK S YAR K AQLGE A FEFD TETLN SDG V FRTS P RG W F T F A H AV F A LL F FFGHIWHG A R T LF R DVF A 480
490 500
....*....|....*....|....*
7SA3_B 481 GIDP S L S a EQVE W G Y F K K V GDPT SQ 505
Cdd:TIGR03039 481 GIDP D L G - EQVE F G V F Q K L GDPT TR 504
PLN00068
PLN00068 photosystem II CP47 chlorophyll A apoprotein; Provisional
1-509
0e+00
photosystem II CP47 chlorophyll A apoprotein; Provisional
Pssm-ID: 177698
Cd Length: 508
Bit Score: 809.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S VLNDPGRL IA VHIMH N AL C AG F AGSM L L F ELA L FDPSDPVL N PMWRQG C F LM PF VS RLG VV NSW Q GWS V 80
Cdd:PLN00068 1 MGLPWYRVHT V VLNDPGRL LS VHIMH T AL V AG W AGSM A L Y ELA V FDPSDPVL D PMWRQG M F VI PF MT RLG IT NSW G GWS I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TG E T F TNPG F W TF E T VA I AHI I FSGL S FLAA C WHWVYWD VAT F F D PK T DE P VI DLPK V FGIHL T L A G IL CFGFGAFH L TG 160
Cdd:PLN00068 81 TG G T V TNPG I W SY E G VA G AHI V FSGL C FLAA I WHWVYWD LEI F C D ER T GK P SL DLPK I FGIHL F L S G VA CFGFGAFH V TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L F GPG M WVSDP L GLTG HI Q G V A P E WGA A GFDP HN PGG VVA HHIA L G IVA I IG GLFH IF VRPP EY LYKGLRMGNIE GT L A S 240
Cdd:PLN00068 161 L Y GPG I WVSDP Y GLTG KV Q P V N P A WGA E GFDP FV PGG IAS HHIA A G TLG I LA GLFH LS VRPP QR LYKGLRMGNIE TV L S S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 GL A VF F SG AF IA AGTMWYG T ATTPIEL W GPTRYQWDQG F FQQ A I S R Q V KASISDGK S P SEAWS E IP T KLAFYDYIGN S PA 320
Cdd:PLN00068 241 SI A AV F FA AF VV AGTMWYG S ATTPIEL F GPTRYQWDQG Y FQQ E I Y R R V SSGLAENQ S L SEAWS K IP E KLAFYDYIGN N PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFR V G R M VD GDG LPT GWLGHPVF K D G EGREL T VRRMP N FFE N FPVVL F D Q DGIVRAD I PFR Q AESKY GI EQ T GVTV S 400
Cdd:PLN00068 321 KGGLFR A G S M DN GDG IAV GWLGHPVF R D K EGREL F VRRMP T FFE T FPVVL V D G DGIVRAD V PFR R AESKY SV EQ V GVTV E 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGGEL D G QTF SDP KD VKKYARRAQLGE P FE F DR SVYD SDG L FR T S N RG F F A F F H VI F G LL W FFGHIWHG L R A LF Q DVF S 480
Cdd:PLN00068 401 FYGGEL N G VSY SDP AT VKKYARRAQLGE I FE L DR ATLK SDG V FR S S P RG W F T F G H AS F A LL F FFGHIWHG A R T LF R DVF A 480
490 500
....*....|....*....|....*....
7SA3_B 481 GIDP S L S A e QVE W G Y F K K V GDPT SQQTPA 509
Cdd:PLN00068 481 GIDP D L D A - QVE F G A F Q K L GDPT TKRQAV 508
PSII
pfam00421 Photosystem II protein;
1-501
0e+00
Photosystem II protein;
Pssm-ID: 425673
Cd Length: 499
Bit Score: 783.62
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 1 MGLPWYRVHT S V L NDPGRL IA VH I MH N AL C AG F AGSM L LFELA L FDPSDPVL N PMWRQG CFL MPF VS RLGV VN SW Q GWSV 80
Cdd:pfam00421 1 MGLPWYRVHT V V I NDPGRL LG VH L MH T AL V AG W AGSM A LFELA H FDPSDPVL K PMWRQG MIV MPF MA RLGV TV SW G GWSV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 81 TGET F TNPGFW T FE T VA I AHII F SGL S FLAA C WHWVYWD VATFF D PK T D EP VI DLPK V FGIHL T L A G IL CFGFGAFH L TG 160
Cdd:pfam00421 81 TGET V TNPGFW S FE G VA A AHII L SGL L FLAA I WHWVYWD LEIWK D KR T G EP AL DLPK I FGIHL I L L G LG CFGFGAFH F TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 161 L F G p GMWVSDP L G L TGH I Q G VAP E WGA A GF D P H NPGG V V A HHIA L GI VA IIGG L FHI FV RPPE Y LY KG LRMGN I E GT L A S 240
Cdd:pfam00421 161 L Y G - GMWVSDP Y G Y TGH V Q P VAP V WGA E GF N P F NPGG I V G HHIA A GI LG IIGG I FHI TT RPPE R LY RA LRMGN G E TV L S S 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 241 G LA VF F SG AFIAAGTMWYG T ATTP I EL W GPTRYQWD Q G F FQQ A I S R Q V KA S ISD G K S PSE AWS E IP T KLAFYDYIGN S PA 320
Cdd:pfam00421 240 S LA AV F FA AFIAAGTMWYG N ATTP S EL F GPTRYQWD S G Y FQQ E I D R R V QS S VAE G A S QAQ AWS F IP R KLAFYDYIGN A PA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 321 KGGLFRVG R MV D GDGL PTG WLGH PV F K D GE GREL T VRRMPNFFE N FPVVL F D Q DGIVRADIPFR QA ESKY GI EQ T GVTV S 400
Cdd:pfam00421 320 KGGLFRVG P MV N GDGL ARS WLGH II F G D ET GREL D VRRMPNFFE T FPVVL V D K DGIVRADIPFR RG ESKY SL EQ L GVTV Q 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 401 FYGGEL D GQTF S DP KD VK K YAR R AQLGE P F E FDR SVYD SDG L FR T S N RG FF AF F H VI F G LL W FFGH I WHG L R A LF Q DVF S 480
Cdd:pfam00421 400 FYGGEL N GQTF T DP WQ VK R YAR H AQLGE L F S FDR VTTE SDG V FR S S P RG WL AF G H FC F A LL F FFGH L WHG G R T LF R DVF A 479
490 500
....*....|....*....|.
7SA3_B 481 G ID P SLS a E QVE W G Y F K K V GD 501
Cdd:pfam00421 480 G FE P GID - R QVE F G V F Q K L GD 499
psbC
CHL00035 photosystem II 44 kDa protein
2-271
1.36e-13
photosystem II 44 kDa protein
Pssm-ID: 214343
Cd Length: 473
Bit Score: 72.83
E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 2 G LP W YRVHTSVL N DP G R L IAV H IM H NA L CAGF AG S M L LFE L A L F D P S dpvl N PM WR QG CF L M P FVSR LG vvns W q G WSVT 81
Cdd:CHL00035 32 G FA W WAGNARLI N LS G K L LGA H VA H AG L IVFW AG A M N LFE V A H F V P E ---- K PM YE QG LI L L P HLAT LG ---- W - G VGPG 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 82 GE TF - T N P G F wtfe TVAIA H I I F S GLSFLAACW H wvywdva TFFD P K T D E PVI ----------- DLPKVF GIHL T L A GI L 149
Cdd:CHL00035 103 GE VI d T F P Y F ---- VSGVL H L I S S AVLGFGGIY H ------- ALLG P E T L E ESF pffgyvwkdkn KMTTIL GIHL I L L GI G 171
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7SA3_B 150 C F -- G F G A FHLT G LF --- G PG ---- MWVSDPLGLTGH I Q G -- VAPEW G AA G F -- DPH N PGGVVAH H IA LG IVA I I GG LF H 216
Cdd:CHL00035 172 A F ll V F K A LYFG G VY dtw A PG ggdv RKITNLTLSPSV I F G yl LKSPF G GE G W iv SVD N LEDIIGG H VW LG SIC I L GG IW H 251
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
7SA3_B 217 I FVR P PEYLYKGLRMGN i E GT L ASG L AVFFSGA FIA AGTM W YGTATT P I E LW GPT 271
Cdd:CHL00035 252 I LTK P FAWARRAFVWSG - E AY L SYS L GALSVFG FIA CCFV W FNNTAY P S E FY GPT 305
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
